C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167281 RBFOX3 9606 - 17:79089345-79516148 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000578887 RBFOX3-001 79233627-79424120 processed_transcript
  ENST00000578998 RBFOX3-005 79090847-79100410 retained_intron
  ENST00000580155 RBFOX3-004 79090816-79516148 protein_coding
  ENST00000580508 RBFOX3-009 79115698-79183472 protein_coding
  ENST00000581393 RBFOX3-006 79090816-79098508 retained_intron
  ENST00000582043 RBFOX3-007 79090800-79235805 protein_coding
  ENST00000582139 RBFOX3-013 79115703-79208556 protein_coding
  ENST00000582344 RBFOX3-012 79298204-79307827 processed_transcript
  ENST00000582880 RBFOX3-011 79091947-79096693 protein_coding
  ENST00000582894 RBFOX3-010 79092380-79097726 protein_coding
  ENST00000583458 RBFOX3-002 79089345-79482598 protein_coding
  ENST00000584778 RBFOX3-003 79094257-79508868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578887ENST00000578998ENST00000580155ENST00000582043ENST00000582880ENST00000583458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578887 0.109±0.00 0.442±0.00 N/A N/A 0.125±0.00 0.042±0.00 0.104±0.10 0.163±0.00 0.080±0.00 0.054±0.00 0.086±0.00 0.088±0.01 N/A N/A
ENST00000578998 0.045±0.00 N/A N/A N/A 0.097±0.00 0.047±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A
ENST00000580155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A
ENST00000582043 N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A 2.708±0.00 N/A N/A 0.464±0.00 N/A N/A
ENST00000582880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 0.072±0.00 N/A
ENST00000583458 N/A N/A 0.072±0.00 3.121±2.40 N/A 6.483±6.41 0.009±0.00 N/A N/A 0.200±0.00 0.033±0.00 0.198±0.16 0.176±0.00 1.853±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0001 CGP 17:79074939-79516148
CIL_0002XY CIL_0002XY_0001 CGP 17:79089345-79742222

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0043484 IEA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010083 rbfox3 RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Danio_rerio
ENSDARG00000074310 rbfox3l RNA binding protein, fox-1 homolog 3, like protein_coding Danio_rerio
ENSDARG00000086696 RBFOX3 (3 of 3) RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Danio_rerio
ENSMUSG00000025576 Rbfox3 RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Mus_musculus

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