C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117731 Rbfox3-007 ENSMUSG00000025576 10090 - 11:118489762-118909550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonLiverOvaryPlacentaENSMUST00000117731
Transcript ID Adipose Adrenal Bladder Brain Colon Liver Ovary Placenta
ENSMUST00000117731 0.435±0.00 0.511±0.06 8.757±2.87 23.551±26.86 0.098±0.02 0.022±0.00 0.176±0.09 0.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0002 CGP 11:118476829-118911597
CIL_0002XY CIL_0002XY_0002 CGP 11:118489762-118992841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003677 IDA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043025 IDA neuronal cell body
GO:0043204 IDA perikaryon

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000578998 RBFOX3-005 retained_intron Homo_sapiens 0 270
ENST00000580155 RBFOX3-004 protein_coding Homo_sapiens 0 1014
ENST00000581393 RBFOX3-006 retained_intron Homo_sapiens 0 327
ENST00000582043 RBFOX3-007 protein_coding Homo_sapiens 0 878
ENST00000582880 RBFOX3-011 protein_coding Homo_sapiens 0 206
ENST00000582894 RBFOX3-010 protein_coding Homo_sapiens 0 204
ENST00000583458 RBFOX3-002 protein_coding Homo_sapiens 0 1690
ENST00000584778 RBFOX3-003 protein_coding Homo_sapiens 0 1014

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