C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 4A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025580 Eif4a3 10090 - 11:119288363-119300089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026667 Eif4a3-001 119288363-119300089 protein_coding
  ENSMUST00000106253 Eif4a3-003 119292841-119300014 protein_coding
  ENSMUST00000129044 Eif4a3-005 119288364-119289010 processed_transcript
  ENSMUST00000134743 Eif4a3-002 119297692-119300018 processed_transcript
  ENSMUST00000135294 Eif4a3-004 119292500-119293596 processed_transcript
  ENSMUST00000138849 Eif4a3-006 119288364-119289076 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026667ENSMUST00000106253ENSMUST00000129044ENSMUST00000134743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026667 41.758±9.69 23.501±1.36 38.403±3.35 41.792±18.72 29.042±7.61 33.016±9.46 23.433±6.30 39.926±2.41 42.111±23.66 37.655±5.08 13.697±1.13 46.253±11.83 55.033±24.72 25.945±11.20
ENSMUST00000106253 N/A N/A N/A 16.282±0.00 N/A N/A N/A N/A N/A N/A N/A 29.111±0.00 34.724±13.87 11.035±0.00
ENSMUST00000129044 N/A N/A N/A 30.334±0.00 26.104±0.00 N/A N/A N/A N/A N/A N/A 40.135±10.83 64.937±30.54 18.513±0.00
ENSMUST00000134743 N/A 20.652±2.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005R CIL_00005R_0002 CGP 11:119267887-119300089
CIL_00031S CIL_00031S_0002 CGP 11:119288363-119345375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 IEA mRNA binding
GO:0004004 IEA ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008143 IEA poly(A) binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0048701 ISS embryonic cranial skeleton morphogenesis
GO:0051028 IEA mRNA transport
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014472 eif4a3 eukaryotic translation initiation factor 4A, isoform 3 protein_coding Danio_rerio
ENSG00000141543 EIF4A3 eukaryotic translation initiation factor 4A3 protein_coding Homo_sapiens

Loading