C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098331 Cpeb1-001 ENSMUSG00000025586 10090 - 7:81347026-81454758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryENSMUST00000098331
Transcript ID Liver Ovary
ENSMUST00000098331 0.170±0.21 2.481±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GR CIL_0006GR_0002 CGP 7:81347026-81493925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 IDA translation repressor activity, nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IDA regulation of translation
GO:0007130 IMP synaptonemal complex assembly
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030529 IEA ribonucleoprotein complex
GO:0032869 ISS cellular response to insulin stimulus
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0048168 IMP regulation of neuronal synaptic plasticity
GO:0071230 IDA cellular response to amino acid stimulus
GO:0071456 IDA cellular response to hypoxia
GO:0072687 IDA meiotic spindle
GO:2000766 IDA negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000562833 RP11-152F13.10-001 protein_coding Homo_sapiens 0 1053
ENST00000567678 CPEB1-015 protein_coding Homo_sapiens 0 370
ENST00000568994 CPEB1-017 protein_coding Homo_sapiens 0 575
ENST00000569257 CPEB1-016 protein_coding Homo_sapiens 0 460
ENST00000570205 CPEB1-018 retained_intron Homo_sapiens 0 492
ENST00000610719 CPEB1-202 protein_coding Homo_sapiens 0 3267
ENST00000611031 CPEB1-201 protein_coding Homo_sapiens 0 3273
ENST00000611163 CPEB1-010 protein_coding Homo_sapiens 0 2335
ENST00000614918 CPEB1-004 protein_coding Homo_sapiens 0 3271
ENST00000614977 CPEB1-009 nonsense_mediated_decay Homo_sapiens 0 1507
ENST00000615198 CPEB1-001 protein_coding Homo_sapiens 0 2599
ENST00000616775 CPEB1-203 protein_coding Homo_sapiens 0 3134
ENST00000616959 CPEB1-007 protein_coding Homo_sapiens 0 2340
ENST00000617462 CPEB1-011 protein_coding Homo_sapiens 0 2340
ENST00000617522 CPEB1-003 protein_coding Homo_sapiens 0 2272
ENST00000617958 CPEB1-006 protein_coding Homo_sapiens 0 3125
ENST00000618449 CPEB1-008 protein_coding Homo_sapiens 0 2896
ENST00000618698 CPEB1-012 retained_intron Homo_sapiens 0 2405
ENST00000619696 CPEB1-204 protein_coding Homo_sapiens 0 2399
ENST00000620182 CPEB1-002 protein_coding Homo_sapiens 0 2543
ENST00000620212 CPEB1-205 protein_coding Homo_sapiens 0 3044

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