C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130310 Cpeb1-002 ENSMUSG00000025586 10090 - 7:81347028-81436377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000130310
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000130310 5.723±1.29 3.167±0.71 1.966±1.80 3.918±0.05 0.898±0.30 1.864±0.67 2.078±1.13 0.264±0.33 8.045±0.79 3.303±1.19 1.013±0.67 2.573±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GR CIL_0006GR_0002 CGP 7:81347026-81493925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0006417 IDA regulation of translation
GO:0007130 IMP synaptonemal complex assembly
GO:0016020 IDA membrane
GO:0048168 IMP regulation of neuronal synaptic plasticity
GO:0072687 IDA meiotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000562833 RP11-152F13.10-001 protein_coding Homo_sapiens 0 1123
ENST00000567678 CPEB1-015 protein_coding Homo_sapiens 0 368
ENST00000568994 CPEB1-017 protein_coding Homo_sapiens 0 575
ENST00000569257 CPEB1-016 protein_coding Homo_sapiens 0 459
ENST00000570205 CPEB1-018 retained_intron Homo_sapiens 0 492
ENST00000610719 CPEB1-202 protein_coding Homo_sapiens 0 3325
ENST00000611031 CPEB1-201 protein_coding Homo_sapiens 0 3330
ENST00000611163 CPEB1-010 protein_coding Homo_sapiens 0 2405
ENST00000614918 CPEB1-004 protein_coding Homo_sapiens 0 3330
ENST00000614977 CPEB1-009 nonsense_mediated_decay Homo_sapiens 0 1576
ENST00000615198 CPEB1-001 protein_coding Homo_sapiens 0 2623
ENST00000616775 CPEB1-203 protein_coding Homo_sapiens 0 3038
ENST00000616959 CPEB1-007 protein_coding Homo_sapiens 0 2410
ENST00000617462 CPEB1-011 protein_coding Homo_sapiens 0 2410
ENST00000617522 CPEB1-003 protein_coding Homo_sapiens 0 2340
ENST00000617958 CPEB1-006 protein_coding Homo_sapiens 0 3018
ENST00000618449 CPEB1-008 protein_coding Homo_sapiens 0 2800
ENST00000618698 CPEB1-012 retained_intron Homo_sapiens 0 2475
ENST00000619696 CPEB1-204 protein_coding Homo_sapiens 0 2470
ENST00000620182 CPEB1-002 protein_coding Homo_sapiens 0 2612
ENST00000620212 CPEB1-205 protein_coding Homo_sapiens 0 3112

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