C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type VII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126780 Col7a1-002 ENSMUSG00000025650 10090 + 9:108969693-108980215 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMusclePlacentaENSMUST00000126780
Transcript ID Brain Liver Muscle Placenta
ENSMUST00000126780 0.762±0.00 0.038±0.01 4.166±1.03 0.881±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0.000008 58
ENST00000328333 COL7A1-001 protein_coding Homo_sapiens 0 1701
ENST00000422991 COL7A1-003 protein_coding Homo_sapiens 0 486
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 0.000006 57
ENST00000467985 COL7A1-004 retained_intron Homo_sapiens 0 226
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 0.00003 57
ENST00000487017 COL7A1-002 retained_intron Homo_sapiens 0 1701
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0.000006 58

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