C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026740 Col7a1-201 ENSMUSG00000025650 10090 + 9:108953745-108984875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000026740
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000026740 0.096±0.00 0.088±0.00 0.490±0.00 0.897±0.00 0.426±0.00 0.072±0.00 0.078±0.00 0.029±0.02 2.296±1.34 0.418±0.19 0.793±0.81 0.081±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0.000008 58
ENST00000328333 COL7A1-001 protein_coding Homo_sapiens 0 8347
ENST00000422991 COL7A1-003 protein_coding Homo_sapiens 0 486
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 0.000006 57
ENST00000465238 COL7A1-008 retained_intron Homo_sapiens 0 388
ENST00000466591 COL7A1-009 retained_intron Homo_sapiens 0 385
ENST00000467985 COL7A1-004 retained_intron Homo_sapiens 0 226
ENST00000470076 COL7A1-007 processed_transcript Homo_sapiens 0 193
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 0.00003 57
ENST00000487017 COL7A1-002 retained_intron Homo_sapiens 0 3140
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0.000006 58

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