C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112070 Col7a1-001 ENSMUSG00000025650 10090 + 9:108953586-108984875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000112070
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112070 5.928±4.14 0.491±0.19 0.179±0.00 0.691±0.14 2.139±0.41 0.217±0.09 0.113±0.06 0.023±0.00 1.617±0.19 1.116±0.50 0.093±0.04 0.560±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0035987 IEA endodermal cell differentiation
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0.000008 58
ENST00000328333 COL7A1-001 protein_coding Homo_sapiens 0 8353
ENST00000422991 COL7A1-003 protein_coding Homo_sapiens 0 486
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 0.000006 57
ENST00000465238 COL7A1-008 retained_intron Homo_sapiens 0 388
ENST00000466591 COL7A1-009 retained_intron Homo_sapiens 0 385
ENST00000467985 COL7A1-004 retained_intron Homo_sapiens 0 226
ENST00000470076 COL7A1-007 processed_transcript Homo_sapiens 0 193
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 0.00003 57
ENST00000487017 COL7A1-002 retained_intron Homo_sapiens 0 3140
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0.000006 58

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