C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 20, member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025854 Fam20c 10090 + 5:138754514-138810077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026972 Fam20c-001 138754514-138810077 protein_coding
  ENSMUST00000159176 Fam20c-003 138786500-138809159 processed_transcript
  ENSMUST00000160645 Fam20c-002 138755083-138809381 nonsense_mediated_decay
  ENSMUST00000160988 Fam20c-004 138788774-138807339 processed_transcript
  ENSMUST00000161641 Fam20c-005 138807190-138809405 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026972ENSMUST00000159176ENSMUST00000160645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026972 16.265±5.13 5.787±0.85 4.220±0.23 20.261±9.79 5.240±1.67 1.449±0.26 4.243±0.31 19.102±4.27 7.764±2.91 3.597±0.32 3.699±0.84 12.448±5.65 4.652±2.86 0.256±0.11
ENSMUST00000159176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.935±0.00 N/A 0.136±0.00
ENSMUST00000160645 N/A 6.304±0.54 N/A 4.329±0.00 4.017±1.43 0.926±0.31 N/A 7.241±4.04 6.368±2.63 1.336±0.41 N/A 16.145±6.31 1.196±0.89 0.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MR CIL_0004MR_0002 CGP 5:138754514-138821619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005509 IDA calcium ion binding
GO:0005615 IDA extracellular space
GO:0005794 IEA Golgi apparatus
GO:0006468 IEA protein phosphorylation
GO:0030501 IDA positive regulation of bone mineralization
GO:0036179 IMP osteoclast maturation
GO:0040036 IMP regulation of fibroblast growth factor receptor signaling pathway
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0051174 IMP regulation of phosphorus metabolic process
GO:0070062 IEA extracellular vesicular exosome
GO:0070166 IMP enamel mineralization
GO:0071895 IDA odontoblast differentiation
GO:0097187 IMP dentinogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074317 FAM20C (1 of 2) family with sequence similarity 20, member C protein_coding Danio_rerio
ENSDARG00000090338 fam20cb family with sequence similarity 20, member Cb protein_coding Danio_rerio
ENSG00000177706 FAM20C family with sequence similarity 20, member C protein_coding Homo_sapiens

Loading