C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 20, member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160645 Fam20c-002 ENSMUSG00000025854 10090 + 5:138755083-138809381 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000160645
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000160645 6.304±0.54 4.329±0.00 4.017±1.43 0.926±0.31 7.241±4.04 6.368±2.63 1.336±0.41 16.145±6.31 1.196±0.89 0.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MR CIL_0004MR_0002 CGP 5:138754514-138821619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005509 IDA calcium ion binding
GO:0005615 IDA extracellular space
GO:0030501 IDA positive regulation of bone mineralization
GO:0036179 IMP osteoclast maturation
GO:0040036 IMP regulation of fibroblast growth factor receptor signaling pathway
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0051174 IMP regulation of phosphorus metabolic process
GO:0070166 IMP enamel mineralization
GO:0071895 IDA odontoblast differentiation
GO:0097187 IMP dentinogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313766 FAM20C-001 protein_coding Homo_sapiens 0 1288
ENST00000477004 FAM20C-003 processed_transcript Homo_sapiens 0 313
ENST00000515795 FAM20C-004 retained_intron Homo_sapiens 0 979

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