C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 20, member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026972 Fam20c-001 ENSMUSG00000025854 10090 + 5:138754514-138810077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026972 16.265±5.13 5.787±0.85 4.220±0.23 20.261±9.79 5.240±1.67 1.449±0.26 4.243±0.31 19.102±4.27 7.764±2.91 3.597±0.32 3.699±0.84 12.448±5.65 4.652±2.86 0.256±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MR CIL_0004MR_0002 CGP 5:138754514-138821619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005509 IDA calcium ion binding
GO:0005615 IDA extracellular space
GO:0005794 IEA Golgi apparatus
GO:0006468 IEA protein phosphorylation
GO:0030501 IDA positive regulation of bone mineralization
GO:0036179 IMP osteoclast maturation
GO:0040036 IMP regulation of fibroblast growth factor receptor signaling pathway
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0051174 IMP regulation of phosphorus metabolic process
GO:0070062 IEA extracellular vesicular exosome
GO:0070166 IMP enamel mineralization
GO:0071895 IDA odontoblast differentiation
GO:0097187 IMP dentinogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313766 FAM20C-001 protein_coding Homo_sapiens 0 1624
ENST00000477004 FAM20C-003 processed_transcript Homo_sapiens 0 313
ENST00000515795 FAM20C-004 retained_intron Homo_sapiens 0 979

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