C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025862 Stag2 10090 + X:42149317-42277185 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069619 Stag2-001 42150701-42277185 protein_coding
  ENSMUST00000115072 Stag2-201 42149412-42277175 protein_coding
  ENSMUST00000115073 Stag2-002 42149317-42277185 protein_coding
  ENSMUST00000123245 Stag2-007 42151014-42206124 protein_coding
  ENSMUST00000127618 Stag2-006 42149683-42206121 protein_coding
  ENSMUST00000128799 Stag2-005 42152180-42221029 protein_coding
  ENSMUST00000136323 Stag2-003 42149541-42212680 retained_intron
  ENSMUST00000141414 Stag2-004 42150154-42211419 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069619ENSMUST00000115072ENSMUST00000115073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069619 5.042±0.73 3.241±1.13 7.329±1.92 5.015±3.12 4.712±1.37 2.865±0.78 1.196±0.61 2.840±0.84 7.990±4.86 7.892±1.13 5.973±0.46 6.244±2.22 4.496±0.80 1.244±0.59
ENSMUST00000115072 2.206±0.00 N/A N/A 3.542±0.00 1.473±0.00 0.625±0.00 0.583±0.00 0.952±0.29 N/A 2.247±0.00 N/A 2.890±1.43 0.989±0.10 0.721±0.00
ENSMUST00000115073 0.861±0.00 0.749±0.00 2.404±0.79 3.727±0.11 1.331±0.00 0.833±0.00 N/A N/A 4.019±1.12 N/A 1.625±0.26 2.007±1.16 1.781±0.00 1.038±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YQ CIL_0007YQ_0002 VISTA X:42042580-42644283
CIL_0000GB CIL_0000GB_0003 CGP X:42059679-42277185
CIL_0000AX CIL_0000AX_0002 CGP X:42149317-42529330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005886 IEA plasma membrane
GO:0007062 IEA sister chromatid cohesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane
GO:0019827 IMP stem cell maintenance
GO:0032876 IEA negative regulation of DNA endoreduplication
GO:0045111 IEA intermediate filament cytoskeleton
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053668 stag2b stromal antigen 2b protein_coding Danio_rerio
ENSG00000101972 STAG2 stromal antigen 2 protein_coding Homo_sapiens

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