C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069619 Stag2-001 ENSMUSG00000025862 10090 + X:42150701-42277185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069619 5.042±0.73 3.241±1.13 7.329±1.92 5.015±3.12 4.712±1.37 2.865±0.78 1.196±0.61 2.840±0.84 7.990±4.86 7.892±1.13 5.973±0.46 6.244±2.22 4.496±0.80 1.244±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YQ CIL_0007YQ_0002 VISTA X:42042580-42644283
CIL_0000GB CIL_0000GB_0003 CGP X:42059679-42277185
CIL_0000AX CIL_0000AX_0002 CGP X:42149317-42529330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding
GO:0005654 TAS nucleoplasm
GO:0007067 IEA mitotic nuclear division
GO:0019827 IMP stem cell maintenance
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218089 STAG2-006 protein_coding Homo_sapiens 0 5312
ENST00000371144 STAG2-008 protein_coding Homo_sapiens 0 6119
ENST00000371145 STAG2-019 protein_coding Homo_sapiens 0 5312
ENST00000371157 STAG2-001 protein_coding Homo_sapiens 0 8669
ENST00000371160 STAG2-018 protein_coding Homo_sapiens 0 8578
ENST00000394477 STAG2-020 protein_coding Homo_sapiens 0 424
ENST00000394478 STAG2-017 protein_coding Homo_sapiens 0 614
ENST00000428941 STAG2-014 protein_coding Homo_sapiens 0 843
ENST00000435103 STAG2-011 protein_coding Homo_sapiens 0 771
ENST00000435215 STAG2-013 protein_coding Homo_sapiens 0 1002
ENST00000455404 STAG2-002 protein_coding Homo_sapiens 0 2558
ENST00000458176 STAG2-005 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000458700 STAG2-007 protein_coding Homo_sapiens 0 283
ENST00000466748 STAG2-012 processed_transcript Homo_sapiens 0 1138
ENST00000471107 STAG2-015 processed_transcript Homo_sapiens 0 911
ENST00000475602 STAG2-016 processed_transcript Homo_sapiens 0 339
ENST00000483575 STAG2-009 processed_transcript Homo_sapiens 0 773

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