C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type III, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026043 Col3a1 10090 + 1:45311538-45349706 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087883 Col3a1-001 45311538-45349706 protein_coding
  ENSMUST00000123204 Col3a1-003 45327589-45328894 retained_intron
  ENSMUST00000129611 Col3a1-002 45311538-45325018 retained_intron
  ENSMUST00000185687 Col3a1-006 45335766-45340674 protein_coding
  ENSMUST00000186021 Col3a1-007 45339958-45347766 protein_coding
  ENSMUST00000189818 Col3a1-004 45311647-45317003 processed_transcript
  ENSMUST00000190943 Col3a1-005 45334200-45337297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087883ENSMUST00000129611
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087883 179.899±91.96 6.140±2.26 402.989±70.78 38.193±6.54 144.482±65.48 82.701±28.51 20.942±4.00 12.126±4.20 10.355±7.44 47.995±9.08 13.687±3.72 80.539±44.78 91.075±45.09 4.686±1.16
ENSMUST00000129611 N/A 6.971±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.903±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0002 CGP 1:45311538-45503282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IMP blood vessel development
GO:0005581 IDA collagen trimer
GO:0005586 IDA collagen type III trimer
GO:0005615 IEA extracellular space
GO:0007160 IEA cell-matrix adhesion
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007507 IEA heart development
GO:0007568 IEA aging
GO:0009314 IEA response to radiation
GO:0009612 IEA response to mechanical stimulus
GO:0018149 IEA peptide cross-linking
GO:0021987 IMP cerebral cortex development
GO:0030199 IMP collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0034097 IEA response to cytokine
GO:0035025 IDA positive regulation of Rho protein signal transduction
GO:0042060 IEA wound healing
GO:0043206 IEA extracellular fibril organization
GO:0043588 IEA skin development
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IEA platelet-derived growth factor binding
GO:0048565 IMP digestive tract development
GO:0050777 IEA negative regulation of immune response
GO:0060414 IMP aorta smooth muscle tissue morphogenesis
GO:0071230 IDA cellular response to amino acid stimulus
GO:2001223 IMP negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000168542 COL3A1 collagen, type III, alpha 1 protein_coding Homo_sapiens

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