C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type III, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087883 Col3a1-001 ENSMUSG00000026043 10090 + 1:45311538-45349706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087883
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087883 179.899±91.96 6.140±2.26 402.989±70.78 38.193±6.54 144.482±65.48 82.701±28.51 20.942±4.00 12.126±4.20 10.355±7.44 47.995±9.08 13.687±3.72 80.539±44.78 91.075±45.09 4.686±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0002 CGP 1:45311538-45503282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IMP blood vessel development
GO:0005581 IDA collagen trimer
GO:0005586 IDA collagen type III trimer
GO:0005615 IEA extracellular space
GO:0007160 IEA cell-matrix adhesion
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007507 IEA heart development
GO:0007568 IEA aging
GO:0009314 IEA response to radiation
GO:0009612 IEA response to mechanical stimulus
GO:0018149 IEA peptide cross-linking
GO:0021987 IMP cerebral cortex development
GO:0030199 IMP collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0034097 IEA response to cytokine
GO:0035025 IDA positive regulation of Rho protein signal transduction
GO:0042060 IEA wound healing
GO:0043206 IEA extracellular fibril organization
GO:0043588 IEA skin development
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IEA platelet-derived growth factor binding
GO:0048565 IMP digestive tract development
GO:0050777 IEA negative regulation of immune response
GO:0060414 IMP aorta smooth muscle tissue morphogenesis
GO:0071230 IDA cellular response to amino acid stimulus
GO:2001223 IMP negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009393 col1a1a-001 protein_coding Danio_rerio 2e-22 113
ENSDART00000047010 col1a1a-201 protein_coding Danio_rerio 8e-21 108
ENSDART00000140586 col1a1a-002 processed_transcript Danio_rerio 8e-21 108
ENST00000304636 COL3A1-001 protein_coding Homo_sapiens 0 5860
ENST00000317840 COL3A1-201 protein_coding Homo_sapiens 0 3033
ENST00000450867 COL3A1-004 protein_coding Homo_sapiens 0 204
ENST00000470167 COL3A1-003 retained_intron Homo_sapiens 0 396
ENST00000487010 COL3A1-002 retained_intron Homo_sapiens 0 776

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