C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleic acid binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026107 Nabp1 10090 - 1:51465862-51478425 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027279 Nabp1-001 51469488-51478399 protein_coding
  ENSMUST00000185534 Nabp1-008 51471142-51478399 protein_coding
  ENSMUST00000185961 Nabp1-010 51471339-51473396 retained_intron
  ENSMUST00000186003 Nabp1-006 51466007-51478067 nonsense_mediated_decay
  ENSMUST00000186684 Nabp1-005 51469857-51478399 protein_coding
  ENSMUST00000188051 Nabp1-007 51471129-51478425 protein_coding
  ENSMUST00000188204 Nabp1-009 51470807-51478399 protein_coding
  ENSMUST00000188303 Nabp1-004 51475592-51478399 retained_intron
  ENSMUST00000189542 Nabp1-003 51465862-51478399 nonsense_mediated_decay
  ENSMUST00000190103 Nabp1-002 51468690-51478399 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027279ENSMUST00000185534ENSMUST00000186003ENSMUST00000186684ENSMUST00000188051ENSMUST00000188204ENSMUST00000188303ENSMUST00000189542ENSMUST00000190103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027279 9.447±2.76 20.589±3.11 14.056±3.50 1.039±0.36 26.802±10.69 2.184±0.96 4.072±0.67 5.258±1.51 2.579±0.67 6.486±1.06 1.947±0.83 4.209±2.57 22.850±7.77 8.133±1.08
ENSMUST00000185534 19.104±1.87 N/A 23.273±0.00 1.558±0.00 N/A 1.867±0.70 10.940±0.73 14.372±2.26 3.854±0.70 7.636±1.22 N/A 4.353±0.07 42.673±17.22 115.319±36.11
ENSMUST00000186003 2.921±0.00 N/A 10.193±3.54 0.353±0.03 4.478±0.00 N/A N/A N/A N/A N/A 0.441±0.00 0.996±0.43 4.427±0.87 N/A
ENSMUST00000186684 N/A 3.377±1.20 N/A 0.415±0.00 16.779±3.15 0.714±0.14 N/A 3.389±1.09 0.878±0.26 2.370±0.54 1.031±0.25 1.348±0.35 10.789±3.64 5.644±0.52
ENSMUST00000188051 N/A N/A N/A 6.050±0.00 N/A N/A N/A N/A N/A N/A N/A 10.724±0.00 131.568±60.93 194.081±0.00
ENSMUST00000188204 N/A N/A N/A 1.782±0.00 N/A N/A N/A N/A N/A N/A 2.487±0.18 N/A N/A 24.722±0.00
ENSMUST00000188303 N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189542 4.112±0.85 1.947±0.07 N/A N/A 10.409±2.41 0.347±0.14 N/A 2.016±0.31 0.486±0.14 1.221±0.20 N/A 0.955±0.35 4.740±0.00 3.304±0.11
ENSMUST00000190103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.674±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022K CIL_00022K_0002 CGP 1:51289126-51478425

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007093 ISS mitotic cell cycle checkpoint
GO:0010212 ISS response to ionizing radiation
GO:0070876 ISS SOSS complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004692 nabp1a nucleic acid binding protein 1a protein_coding Danio_rerio
ENSDARG00000043685 nabp1b nucleic acid binding protein 1b protein_coding Danio_rerio
ENSG00000173559 NABP1 nucleic acid binding protein 1 protein_coding Homo_sapiens

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