C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleic acid binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173559 NABP1 9606 + 2:191678068-191696659 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307834 NABP1-003 191678127-191686939 nonsense_mediated_decay
  ENST00000307849 NABP1-002 191678136-191687572 nonsense_mediated_decay
  ENST00000409510 NABP1-010 191678204-191685894 protein_coding
  ENST00000410026 NABP1-004 191678136-191696659 protein_coding
  ENST00000425611 NABP1-001 191678532-191686948 protein_coding
  ENST00000435931 NABP1-007 191678990-191686177 protein_coding
  ENST00000451500 NABP1-006 191678147-191686157 nonsense_mediated_decay
  ENST00000462712 NABP1-008 191678136-191683135 retained_intron
  ENST00000462824 NABP1-009 191683505-191685076 retained_intron
  ENST00000491331 NABP1-005 191678068-191682487 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307834ENST00000307849ENST00000409510ENST00000410026ENST00000425611ENST00000451500ENST00000462712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307834 2.052±0.00 N/A N/A N/A 4.719±0.00 N/A N/A 2.604±0.00 N/A 6.560±0.00 N/A 2.241±0.00 1.093±0.00 2.499±0.00
ENST00000307849 N/A N/A N/A N/A 2.963±0.00 1.191±0.00 N/A 0.708±0.00 N/A 2.545±0.00 0.130±0.00 1.884±1.35 N/A 4.289±0.00
ENST00000409510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.409±0.00 21.283±0.00 6.561±0.00 21.918±0.00
ENST00000410026 0.884±0.00 N/A 0.546±0.00 0.107±0.00 1.057±0.00 0.133±0.00 0.167±0.00 N/A 0.231±0.00 0.865±0.00 0.049±0.00 1.075±0.63 0.267±0.04 1.276±0.93
ENST00000425611 2.560±0.00 4.761±0.00 N/A 0.581±0.13 N/A 2.266±0.00 0.444±0.00 1.941±0.00 1.540±0.00 4.336±0.00 0.655±0.00 5.694±5.09 3.117±0.25 3.155±0.00
ENST00000451500 N/A N/A N/A 0.308±0.00 N/A N/A N/A 1.188±0.00 1.244±0.55 N/A N/A N/A N/A N/A
ENST00000462712 N/A N/A 3.435±0.00 0.608±0.00 7.274±0.00 3.271±0.00 N/A 2.723±0.00 4.845±0.00 9.053±0.00 0.674±0.00 7.071±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042N CIL_00042N_0002 CGP 2:191678068-191847255

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003676 IEA nucleic acid binding
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IMP DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0010212 IMP response to ionizing radiation
GO:0070876 IDA SOSS complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004692 nabp1a nucleic acid binding protein 1a protein_coding Danio_rerio
ENSDARG00000043685 nabp1b nucleic acid binding protein 1b protein_coding Danio_rerio
ENSMUSG00000026107 Nabp1 nucleic acid binding protein 1 protein_coding Mus_musculus

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