C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleic acid binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186003 Nabp1-006 ENSMUSG00000026107 10090 - 1:51466007-51478067 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastMuscleOvaryPlacentaENSMUST00000186003
Transcript ID Adipose Bladder Brain Breast Muscle Ovary Placenta
ENSMUST00000186003 2.921±0.00 10.193±3.54 0.353±0.03 4.478±0.00 0.441±0.00 0.996±0.43 4.427±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022K CIL_00022K_0002 CGP 1:51289126-51478425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0005634 ISS nucleus
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007093 ISS mitotic cell cycle checkpoint
GO:0010212 ISS response to ionizing radiation
GO:0070876 ISS SOSS complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307834 NABP1-003 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000307849 NABP1-002 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000409510 NABP1-010 protein_coding Homo_sapiens 0 684
ENST00000410026 NABP1-004 protein_coding Homo_sapiens 0 752
ENST00000425611 NABP1-001 protein_coding Homo_sapiens 0 756
ENST00000435931 NABP1-007 protein_coding Homo_sapiens 0 747
ENST00000451500 NABP1-006 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000462712 NABP1-008 retained_intron Homo_sapiens 0 318
ENST00000491331 NABP1-005 retained_intron Homo_sapiens 0 318

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