C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleic acid binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027279 Nabp1-001 ENSMUSG00000026107 10090 - 1:51469488-51478399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027279 9.447±2.76 20.589±3.11 14.056±3.50 1.039±0.36 26.802±10.69 2.184±0.96 4.072±0.67 5.258±1.51 2.579±0.67 6.486±1.06 1.947±0.83 4.209±2.57 22.850±7.77 8.133±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022K CIL_00022K_0002 CGP 1:51289126-51478425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007093 ISS mitotic cell cycle checkpoint
GO:0010212 ISS response to ionizing radiation
GO:0070876 ISS SOSS complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307834 NABP1-003 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000307849 NABP1-002 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000409510 NABP1-010 protein_coding Homo_sapiens 0 684
ENST00000410026 NABP1-004 protein_coding Homo_sapiens 0 867
ENST00000425611 NABP1-001 protein_coding Homo_sapiens 0 1000
ENST00000435931 NABP1-007 protein_coding Homo_sapiens 0 817
ENST00000451500 NABP1-006 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000462712 NABP1-008 retained_intron Homo_sapiens 0 318
ENST00000491331 NABP1-005 retained_intron Homo_sapiens 0 318

Loading