C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026176 Ctdsp1 10090 + 1:74391509-74397285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027367 Ctdsp1-001 74391509-74397285 protein_coding
  ENSMUST00000141175 Ctdsp1-002 74391795-74397282 retained_intron
  ENSMUST00000152659 Ctdsp1-003 74392162-74394069 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027367ENSMUST00000141175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027367 56.029±11.52 23.327±8.45 30.172±16.91 8.992±5.45 28.981±18.04 35.305±15.32 15.805±13.76 44.234±27.88 20.494±9.56 45.826±13.68 33.285±2.18 28.978±14.98 14.574±11.19 2.576±1.87
ENSMUST00000141175 9.337±0.00 46.623±15.68 N/A 1.578±0.61 19.460±5.12 18.462±10.99 N/A N/A N/A 25.041±11.51 N/A 30.639±18.42 1.472±0.74 0.606±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VF CIL_0005VF_0002 CGP 1:74375195-74397285
CIL_000650 CIL_000650_0002 CGP 1:74391509-74435559

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001933 IDA negative regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006470 IEA protein dephosphorylation
GO:0008420 IEA CTD phosphatase activity
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0050768 IDA negative regulation of neurogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:2000134 IDA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040674 ctdsp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein_coding Danio_rerio
ENSG00000144579 CTDSP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein_coding Homo_sapiens

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