C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141175 Ctdsp1-002 ENSMUSG00000026176 10090 + 1:74391795-74397282 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENSMUST00000141175
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENSMUST00000141175 9.337±0.00 46.623±15.68 1.578±0.61 19.460±5.12 18.462±10.99 25.041±11.51 30.639±18.42 1.472±0.74 0.606±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VF CIL_0005VF_0002 CGP 1:74375195-74397285
CIL_000650 CIL_000650_0002 CGP 1:74391509-74435559

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273062 CTDSP1-001 protein_coding Homo_sapiens 0 826
ENST00000428361 CTDSP1-011 protein_coding Homo_sapiens 0 819
ENST00000431127 CTDSP1-008 protein_coding Homo_sapiens 0 254
ENST00000443891 CTDSP1-002 protein_coding Homo_sapiens 0 819
ENST00000452977 CTDSP1-012 protein_coding Homo_sapiens 0 702
ENST00000464255 CTDSP1-015 processed_transcript Homo_sapiens 0 819
ENST00000473420 CTDSP1-004 processed_transcript Homo_sapiens 0 595
ENST00000482272 CTDSP1-010 retained_intron Homo_sapiens 0 625
ENST00000488627 CTDSP1-009 processed_transcript Homo_sapiens 0 819
ENST00000491064 CTDSP1-014 processed_transcript Homo_sapiens 0 774
ENST00000494067 CTDSP1-013 retained_intron Homo_sapiens 0 259
ENST00000496785 CTDSP1-007 processed_transcript Homo_sapiens 0 219
ENST00000497677 CTDSP1-006 retained_intron Homo_sapiens 0 625
ENST00000498160 CTDSP1-005 processed_transcript Homo_sapiens 0 628

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