C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000018280-ENSG00000144579 CGP 9606 2:218382029-218405941
GeneTranscriptPositionBiotype
ENSG00000018280 (SLC11A1)
solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 		ENST00000233202 (SLC11A1-001) 218382029-218396894 protein_coding
ENST00000354352 (SLC11A1-003) 218382248-218395323 nonsense_mediated_decay
ENST00000460592 (SLC11A1-018) 218385155-218385574 retained_intron
ENST00000465984 (SLC11A1-004) 218382188-218396026 retained_intron
ENST00000468221 (SLC11A1-009) 218382029-218396027 retained_intron
ENST00000468721 (SLC11A1-005) 218392840-218394186 retained_intron
ENST00000469449 (SLC11A1-011) 218383687-218388385 retained_intron
ENST00000469799 (SLC11A1-016) 218382279-218387112 retained_intron
ENST00000471875 (SLC11A1-015) 218382279-218386772 retained_intron
ENST00000473367 (SLC11A1-013) 218382169-218386667 nonsense_mediated_decay
ENST00000475225 (SLC11A1-002) 218382302-218388385 retained_intron
ENST00000481524 (SLC11A1-014) 218382273-218387584 nonsense_mediated_decay
ENST00000483487 (SLC11A1-017) 218384167-218386813 retained_intron
ENST00000490536 (SLC11A1-012) 218392590-218394635 retained_intron
ENST00000490872 (SLC11A1-019) 218389965-218391771 retained_intron
ENST00000492413 (SLC11A1-006) 218382287-218387134 retained_intron
ENST00000494322 (SLC11A1-010) 218382273-218392635 retained_intron
ENST00000539932 (SLC11A1-007) 218382203-218392692 nonsense_mediated_decay
ENSG00000144579 (CTDSP1)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 		ENST00000273062 (CTDSP1-001) 218399755-218405941 protein_coding
ENST00000428361 (CTDSP1-011) 218400308-218404479 protein_coding
ENST00000431127 (CTDSP1-008) 218400678-218402407 protein_coding
ENST00000443891 (CTDSP1-002) 218398338-218404676 protein_coding
ENST00000452977 (CTDSP1-012) 218400134-218404479 protein_coding
ENST00000464255 (CTDSP1-015) 218401168-218404587 processed_transcript
ENST00000473420 (CTDSP1-004) 218398778-218403400 processed_transcript
ENST00000482272 (CTDSP1-010) 218401167-218403417 retained_intron
ENST00000488627 (CTDSP1-009) 218401062-218404773 processed_transcript
ENST00000491064 (CTDSP1-014) 218398256-218404418 processed_transcript
ENST00000492545 (CTDSP1-003) 218398703-218400070 processed_transcript
ENST00000494067 (CTDSP1-013) 218400133-218402431 retained_intron
ENST00000496785 (CTDSP1-007) 218400587-218401712 processed_transcript
ENST00000497677 (CTDSP1-006) 218400071-218403741 retained_intron
ENST00000498160 (CTDSP1-005) 218398974-218403415 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0005VF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026177-ENSMUSG00000026176 CGP 10090 1:74375195-74397285
GeneTranscriptPositionBiotype
ENSMUSG00000026176 (Ctdsp1)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 		ENSMUST00000027367 (Ctdsp1-001) 74391509-74397285 protein_coding
ENSMUST00000141175 (Ctdsp1-002) 74391795-74397282 retained_intron
ENSMUST00000152659 (Ctdsp1-003) 74392162-74394069 protein_coding
ENSMUSG00000026177 (Slc11a1)
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 		ENSMUST00000027368 (Slc11a1-001) 74375203-74386062 protein_coding
ENSMUST00000127487 (Slc11a1-008) 74383034-74383834 retained_intron
ENSMUST00000131511 (Slc11a1-003) 74375225-74386051 retained_intron
ENSMUST00000133896 (Slc11a1-007) 74381651-74384173 retained_intron
ENSMUST00000134189 (Slc11a1-010) 74383600-74385197 processed_transcript
ENSMUST00000135137 (Slc11a1-005) 74375572-74376890 processed_transcript
ENSMUST00000136786 (Slc11a1-004) 74375253-74381826 processed_transcript
ENSMUST00000147233 (Slc11a1-002) 74375203-74386052 retained_intron
ENSMUST00000149166 (Slc11a1-009) 74383341-74384173 processed_transcript
ENSMUST00000155865 (Slc11a1-006) 74376657-74379856 processed_transcript
ENSMUST00000187516 (Slc11a1-011) 74375195-74385755 protein_coding
ENSMUSG00000065468 (Mir26b)
microRNA 26b 		ENSMUST00000083534 (Mir26b-201) 74394310-74394394 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VF_0001ENSG00000018280ENST00000233202ENST00000354352ENST00000468221ENST00000469449ENST00000473367ENST00000475225ENST00000483487ENST00000490536ENST00000490872ENST00000494322ENST00000539932ENSG00000144579ENST00000273062ENST00000428361ENST00000491064CIL_0005VF_0002ENSMUSG00000026176ENSMUST00000027367ENSMUST00000141175ENSMUSG00000026177ENSMUST00000027368ENSMUST00000127487ENSMUST00000131511ENSMUST00000133896ENSMUST00000134189ENSMUST00000136786ENSMUST00000147233ENSMUST00000149166ENSMUST00000187516ENSMUSG00000065468ENSMUST00000083534
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018280 ENST00000233202 N/A 0.823±0.00 N/A 0.028±0.00 0.266±0.00 0.233±0.20 0.017±0.00 N/A 0.874±0.00 N/A 0.092±0.00 0.426±0.00 N/A 0.517±0.00
ENST00000354352 7.010±0.00 N/A N/A N/A 0.558±0.00 N/A N/A 1.756±0.00 0.641±0.00 15.428±9.37 N/A 1.049±0.00 5.559±2.76 N/A
ENST00000460592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468221 N/A 0.456±0.00 N/A 1.601±0.00 0.301±0.00 N/A N/A N/A 0.186±0.00 N/A N/A 0.270±0.11 0.176±0.00 N/A
ENST00000468721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469449 N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 0.247±0.00 N/A N/A
ENST00000469799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473367 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475225 N/A 1.306±0.00 N/A N/A N/A 0.133±0.00 N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.299±0.00
ENST00000481524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483487 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A N/A
ENST00000490872 N/A N/A N/A N/A N/A 1.384±0.00 N/A N/A 0.760±0.00 N/A N/A N/A N/A N/A
ENST00000492413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494322 N/A N/A 0.022±0.00 N/A N/A N/A 0.558±0.43 N/A 0.683±0.00 N/A N/A 0.228±0.00 N/A N/A
ENST00000539932 N/A N/A 0.027±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A
ENSG00000144579 ENST00000273062 16.799±0.00 8.606±0.00 1.443±0.00 N/A 12.547±0.00 4.616±0.00 4.173±3.95 7.908±3.18 6.587±5.45 3.975±2.52 5.245±3.05 38.351±42.09 32.589±9.60 7.837±1.34
ENST00000428361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.124±0.00 N/A N/A N/A
ENST00000431127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491064 N/A N/A 2.330±0.00 1.304±0.00 3.347±0.00 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026176 ENSMUST00000027367 56.029±11.52 23.327±8.45 30.172±16.91 8.992±5.45 28.981±18.04 35.305±15.32 15.805±13.76 44.234±27.88 20.494±9.56 45.826±13.68 33.285±2.18 28.978±14.98 14.574±11.19 2.576±1.87
ENSMUST00000141175 9.337±0.00 46.623±15.68 N/A 1.578±0.61 19.460±5.12 18.462±10.99 N/A N/A N/A 25.041±11.51 N/A 30.639±18.42 1.472±0.74 0.606±0.31
ENSMUST00000152659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026177 ENSMUST00000027368 5.390±1.00 7.979±1.57 3.117±0.20 0.357±0.13 8.493±2.44 2.502±0.55 0.941±0.39 0.623±0.23 4.310±2.49 3.958±0.61 0.438±0.17 4.174±1.71 0.870±1.06 0.359±0.01
ENSMUST00000127487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.06 N/A
ENSMUST00000131511 N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A 0.200±0.00 N/A
ENSMUST00000133896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00
ENSMUST00000134189 18.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00 N/A 0.471±0.00 N/A
ENSMUST00000135137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136786 N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00
ENSMUST00000147233 2.965±0.96 N/A 1.163±0.06 N/A 3.474±0.32 1.093±0.20 0.530±0.04 0.442±0.00 1.899±0.59 1.496±0.39 0.107±0.00 1.529±0.48 0.239±0.00 0.321±0.26
ENSMUST00000149166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.00
ENSMUST00000155865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187516 5.278±0.80 4.653±1.56 N/A 0.314±0.00 7.964±1.90 2.070±0.22 1.137±0.58 1.008±0.33 2.435±0.97 3.026±0.93 0.117±0.00 3.975±1.21 0.033±0.00 0.297±0.05
ENSMUSG00000065468 ENSMUST00000083534 5696.870±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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