C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144579 CTDSP1 9606 + 2:218398256-218405941 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273062 CTDSP1-001 218399755-218405941 protein_coding
  ENST00000428361 CTDSP1-011 218400308-218404479 protein_coding
  ENST00000431127 CTDSP1-008 218400678-218402407 protein_coding
  ENST00000443891 CTDSP1-002 218398338-218404676 protein_coding
  ENST00000452977 CTDSP1-012 218400134-218404479 protein_coding
  ENST00000464255 CTDSP1-015 218401168-218404587 processed_transcript
  ENST00000473420 CTDSP1-004 218398778-218403400 processed_transcript
  ENST00000482272 CTDSP1-010 218401167-218403417 retained_intron
  ENST00000488627 CTDSP1-009 218401062-218404773 processed_transcript
  ENST00000491064 CTDSP1-014 218398256-218404418 processed_transcript
  ENST00000492545 CTDSP1-003 218398703-218400070 processed_transcript
  ENST00000494067 CTDSP1-013 218400133-218402431 retained_intron
  ENST00000496785 CTDSP1-007 218400587-218401712 processed_transcript
  ENST00000497677 CTDSP1-006 218400071-218403741 retained_intron
  ENST00000498160 CTDSP1-005 218398974-218403415 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273062ENST00000428361ENST00000491064
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273062 16.799±0.00 8.606±0.00 1.443±0.00 N/A 12.547±0.00 4.616±0.00 4.173±3.95 7.908±3.18 6.587±5.45 3.975±2.52 5.245±3.05 38.351±42.09 32.589±9.60 7.837±1.34
ENST00000428361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.124±0.00 N/A N/A N/A
ENST00000491064 N/A N/A 2.330±0.00 1.304±0.00 3.347±0.00 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VF CIL_0005VF_0001 CGP 2:218382029-218405941
CIL_000650 CIL_000650_0001 CGP 2:218398256-218453295

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001933 IEA negative regulation of protein phosphorylation
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006470 IDA protein dephosphorylation
GO:0008420 IDA CTD phosphatase activity
GO:0016791 IEA phosphatase activity
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0050768 IEA negative regulation of neurogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040674 ctdsp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein_coding Danio_rerio
ENSMUSG00000026176 Ctdsp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein_coding Mus_musculus

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