C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027367 Ctdsp1-001 ENSMUSG00000026176 10090 + 1:74391509-74397285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027367 56.029±11.52 23.327±8.45 30.172±16.91 8.992±5.45 28.981±18.04 35.305±15.32 15.805±13.76 44.234±27.88 20.494±9.56 45.826±13.68 33.285±2.18 28.978±14.98 14.574±11.19 2.576±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VF CIL_0005VF_0002 CGP 1:74375195-74397285
CIL_000650 CIL_000650_0002 CGP 1:74391509-74435559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001933 IDA negative regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006470 IEA protein dephosphorylation
GO:0008420 IEA CTD phosphatase activity
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0050768 IDA negative regulation of neurogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:2000134 IDA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273062 CTDSP1-001 protein_coding Homo_sapiens 0 1652
ENST00000428361 CTDSP1-011 protein_coding Homo_sapiens 0 1024
ENST00000431127 CTDSP1-008 protein_coding Homo_sapiens 0 460
ENST00000443891 CTDSP1-002 protein_coding Homo_sapiens 0 1022
ENST00000452977 CTDSP1-012 protein_coding Homo_sapiens 0 944
ENST00000464255 CTDSP1-015 processed_transcript Homo_sapiens 0 1024
ENST00000473420 CTDSP1-004 processed_transcript Homo_sapiens 0 798
ENST00000482272 CTDSP1-010 retained_intron Homo_sapiens 0 828
ENST00000488627 CTDSP1-009 processed_transcript Homo_sapiens 0 1020
ENST00000491064 CTDSP1-014 processed_transcript Homo_sapiens 0 976
ENST00000494067 CTDSP1-013 retained_intron Homo_sapiens 0 508
ENST00000496785 CTDSP1-007 processed_transcript Homo_sapiens 0 219
ENST00000497677 CTDSP1-006 retained_intron Homo_sapiens 0 974
ENST00000498160 CTDSP1-005 processed_transcript Homo_sapiens 0 841

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