C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA1 associated RING domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026196 Bard1 10090 - 1:71027498-71103146 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027393 Bard1-001 71027498-71103146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027393
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027393 0.619±0.45 0.356±0.06 0.366±0.03 0.875±0.59 0.517±0.16 0.787±0.10 0.115±0.02 0.218±0.02 3.002±3.61 0.402±0.10 0.030±0.02 1.394±0.60 0.891±0.58 2.227±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AI CIL_0000AI_0003 CGP 1:70725715-71103146
CIL_0000AP CIL_0000AP_0003 CGP 1:71027498-71414910

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 ISO RNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0006281 IEA DNA repair
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031436 ISS BRCA1-BARD1 complex
GO:0042325 ISS regulation of phosphorylation
GO:0042803 ISS protein homodimerization activity
GO:0043065 ISS positive regulation of apoptotic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046826 ISS negative regulation of protein export from nucleus
GO:0046982 ISS protein heterodimerization activity
GO:0070531 IEA BRCA1-A complex
GO:0085020 ISS protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076733 bard1 BRCA1 associated RING domain 1 protein_coding Danio_rerio
ENSG00000138376 BARD1 BRCA1 associated RING domain 1 protein_coding Homo_sapiens

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