C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076733-ENSDARG00000074749 CGP 7955 9:41707564-41838911
GeneTranscriptPositionBiotype
ENSDARG00000074749 (abca12)
ATP-binding cassette, sub-family A (ABC1), member 12 		ENSDART00000109197 (abca12-201) 41759479-41794424 protein_coding
ENSDART00000138634 (abca12-001) 41758656-41838911 protein_coding
ENSDARG00000076733 (bard1)
BRCA1 associated RING domain 1 		ENSDART00000113160 (bard1-201) 41707564-41743206 protein_coding
ENSDART00000135134 (bard1-002) 41707678-41737966 protein_coding
ENSDART00000141979 (bard1-001) 41707564-41756765 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000AP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138376-ENSG00000144452 CGP 9606 2:214725646-215138428
GeneTranscriptPositionBiotype
ENSG00000138376 (BARD1)
BRCA1 associated RING domain 1 		ENST00000260947 (BARD1-001) 214725646-214809704 protein_coding
ENST00000421162 (BARD1-005) 214730411-214809687 protein_coding
ENST00000432456 (BARD1-004) 214728538-214730508 protein_coding
ENST00000449967 (BARD1-201) 214728553-214809642 protein_coding
ENST00000455743 (BARD1-003) 214728704-214809673 nonsense_mediated_decay
ENST00000465841 (BARD1-006) 214745712-214752478 retained_intron
ENST00000471590 (BARD1-002) 214728424-214731145 processed_transcript
ENST00000471787 (BARD1-007) 214780897-214809670 processed_transcript
ENST00000479904 (BARD1-008) 214796794-214809660 retained_intron
ENST00000613192 (BARD1-202) 214728676-214809683 protein_coding
ENST00000613374 (BARD1-203) 214725646-214809711 protein_coding
ENST00000613706 (BARD1-204) 214725646-214809711 protein_coding
ENST00000617164 (BARD1-205) 214725646-214809711 protein_coding
ENST00000619009 (BARD1-206) 214725646-214809711 protein_coding
ENST00000620057 (BARD1-207) 214728677-214809642 protein_coding
ENSG00000144452 (ABCA12)
ATP-binding cassette, sub-family A (ABC1), member 12 		ENST00000272895 (ABCA12-001) 214931542-215138428 protein_coding
ENST00000389661 (ABCA12-002) 214932622-215032086 protein_coding
ENST00000412081 (ABCA12-003) 215075492-215138404 protein_coding
ENSG00000207274 (SNORA70)
Small nucleolar RNA SNORA70 		ENST00000384544 (SNORA70.1-213) 214846947-214847081 snoRNA
ENSG00000227769 (AC072062.3)
 ENST00000419251 (AC072062.3-002) 215022560-215023118 antisense
ENST00000437897 (AC072062.3-001) 215021998-215042256 antisense
ENST00000595058 (AC072062.3-004) 215022577-215023400 antisense
ENST00000602182 (AC072062.3-003) 215022577-215023118 antisense
ENST00000615813 (AC072062.3-005) 215029280-215042379 antisense
ENSG00000229267 (AC072062.1)
 ENST00000420134 (AC072062.1-002) 214960392-214962062 antisense
ENST00000607412 (AC072062.1-001) 214810229-214963274 antisense
ENSG00000230076 (AC016708.2)
 ENST00000457497 (AC016708.2-001) 214847128-214847445 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000AP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026196-ENSMUSG00000050296 CGP 10090 1:71027498-71414910
GeneTranscriptPositionBiotype
ENSMUSG00000026196 (Bard1)
BRCA1 associated RING domain 1 		ENSMUST00000027393 (Bard1-001) 71027498-71103146 protein_coding
ENSMUSG00000050296 (Abca12)
ATP-binding cassette, sub-family A (ABC1), member 12 		ENSMUST00000087268 (Abca12-001) 71242276-71414910 protein_coding
ENSMUST00000187097 (Abca12-004) 71312166-71414910 retained_intron
ENSMUST00000188752 (Abca12-005) 71290013-71307087 retained_intron
ENSMUST00000189102 (Abca12-002) 71361743-71414896 retained_intron
ENSMUST00000191520 (Abca12-003) 71332618-71335786 retained_intron
ENSMUSG00000089965 (Gm16236)
predicted gene 16236 		ENSMUST00000159588 (Gm16236-001) 71039652-71040030 processed_pseudogene
ENSMUSG00000101551 (RP23-248N10.1)
predicted gene 8870 		ENSMUST00000188170 (RP23-248N10.1-001) 71155246-71156020 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AP_0001ENSDARG00000074749ENSDART00000109197ENSDART00000138634ENSDARG00000076733ENSDART00000113160ENSDART00000135134ENSDART00000141979CIL_0000AP_0002ENSG00000138376ENST00000260947ENST00000421162ENST00000432456ENST00000449967ENST00000455743ENST00000465841ENST00000471590ENST00000471787ENST00000479904ENST00000613192ENST00000613374ENST00000613706ENST00000617164ENST00000619009ENST00000620057ENSG00000144452ENST00000272895ENST00000389661ENST00000412081ENSG00000207274ENST00000384544ENSG00000227769ENST00000419251ENST00000437897ENST00000595058ENST00000602182ENST00000615813ENSG00000229267ENST00000420134ENST00000607412ENSG00000230076ENST00000457497CIL_0000AP_0003ENSMUSG00000026196ENSMUST00000027393ENSMUSG00000050296ENSMUST00000087268ENSMUST00000187097ENSMUST00000188752ENSMUST00000189102ENSMUST00000191520ENSMUSG00000089965ENSMUST00000159588ENSMUSG00000101551ENSMUST00000188170
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AP_0001ENSDARG00000074749ENSDART00000109197ENSDART00000138634ENSDARG00000076733ENSDART00000113160ENSDART00000135134ENSDART00000141979CIL_0000AP_0002ENSG00000138376ENST00000260947ENST00000449967ENST00000455743ENST00000471787ENST00000613192ENST00000613374ENST00000617164ENST00000619009ENST00000620057ENSG00000144452ENST00000272895ENST00000389661ENSG00000207274ENST00000384544ENSG00000227769ENST00000419251ENST00000437897ENST00000595058ENST00000615813ENSG00000229267ENST00000420134ENST00000607412ENSG00000230076ENST00000457497CIL_0000AP_0003ENSMUSG00000026196ENSMUST00000027393ENSMUSG00000050296ENSMUST00000087268ENSMUST00000187097ENSMUST00000188752ENSMUST00000189102ENSMUST00000191520ENSMUSG00000089965ENSMUST00000159588ENSMUSG00000101551ENSMUST00000188170
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000074749 ENSDART00000109197 N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A 0.042±0.00 N/A 0.303±0.00 N/A N/A N/A
ENSDART00000138634 N/A N/A N/A 0.254±0.15 N/A N/A 0.324±0.33 1.855±0.00 N/A N/A 0.480±0.00 N/A N/A N/A
ENSDARG00000076733 ENSDART00000113160 N/A N/A N/A 0.078±0.04 N/A N/A N/A N/A 0.148±0.00 N/A 0.086±0.00 N/A N/A N/A
ENSDART00000135134 N/A N/A N/A 0.100±0.00 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141979 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138376 ENST00000260947 N/A N/A 0.391±0.00 0.452±0.24 N/A N/A 0.215±0.00 N/A N/A N/A 0.525±0.13 0.893±0.40 0.424±0.11 1.537±0.29
ENST00000421162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449967 N/A N/A N/A N/A N/A N/A 0.225±0.00 0.302±0.00 N/A N/A 0.321±0.00 1.054±0.00 N/A N/A
ENST00000455743 0.243±0.00 N/A N/A 0.321±0.00 N/A N/A N/A N/A 0.631±0.48 N/A N/A N/A N/A N/A
ENST00000465841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471787 N/A N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A N/A 1.259±0.00 N/A N/A N/A
ENST00000479904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613192 N/A N/A N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A
ENST00000613374 N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A 0.240±0.00 0.296±0.00 0.081±0.00 N/A
ENST00000613706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617164 0.317±0.00 0.353±0.00 N/A 0.580±0.00 N/A N/A 0.216±0.00 0.090±0.00 N/A 0.364±0.00 0.298±0.00 N/A 0.505±0.00 1.489±0.00
ENST00000619009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 0.458±0.00 1.128±0.00
ENST00000620057 N/A N/A N/A 1.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144452 ENST00000272895 N/A N/A 0.021±0.00 N/A 0.014±0.01 0.062±0.00 0.006±0.00 0.030±0.00 0.019±0.00 N/A N/A 0.035±0.02 0.134±0.04 0.126±0.01
ENST00000389661 N/A 0.002±0.00 N/A 0.087±0.00 0.004±0.00 0.037±0.00 0.003±0.00 N/A N/A 0.001±0.00 0.005±0.00 0.062±0.00 N/A N/A
ENST00000412081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207274 ENST00000384544 N/A N/A N/A 8.760±0.00 N/A N/A N/A 11.627±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227769 ENST00000419251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.734±0.24
ENST00000437897 N/A N/A 0.409±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A 0.077±0.00
ENST00000595058 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00 N/A N/A N/A N/A
ENST00000602182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615813 0.304±0.00 0.555±0.00 N/A 0.700±0.00 0.455±0.00 0.474±0.00 0.157±0.00 0.123±0.00 0.295±0.00 0.291±0.00 0.021±0.00 0.143±0.00 N/A 0.226±0.00
ENSG00000229267 ENST00000420134 N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A 0.053±0.00 N/A 0.443±0.00
ENST00000607412 N/A N/A 0.066±0.00 0.159±0.00 0.228±0.00 0.082±0.00 0.028±0.00 0.127±0.01 N/A N/A N/A 0.016±0.00 0.024±0.01 0.582±0.16
ENSG00000230076 ENST00000457497 0.113±0.00 0.185±0.00 N/A 0.066±0.00 0.065±0.00 0.932±0.00 0.051±0.00 0.125±0.00 0.202±0.09 0.165±0.01 0.400±0.00 0.804±0.47 0.299±0.07 0.186±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026196 ENSMUST00000027393 0.619±0.45 0.356±0.06 0.366±0.03 0.875±0.59 0.517±0.16 0.787±0.10 0.115±0.02 0.218±0.02 3.002±3.61 0.402±0.10 0.030±0.02 1.394±0.60 0.891±0.58 2.227±0.98
ENSMUSG00000050296 ENSMUST00000087268 N/A N/A N/A 0.042±0.01 0.216±0.13 0.934±0.19 0.407±0.08 N/A 0.001±0.00 0.649±0.64 0.022±0.00 0.013±0.00 0.063±0.07 0.100±0.02
ENSMUST00000187097 N/A N/A N/A N/A 0.035±0.01 N/A N/A N/A 0.001±0.00 N/A N/A 0.006±0.00 N/A N/A
ENSMUST00000188752 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A
ENSMUST00000189102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A
ENSMUST00000191520 0.017±0.01 N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.038±0.01 0.057±0.00 N/A 0.082±0.07 0.004±0.00 N/A
ENSMUSG00000089965 ENSMUST00000159588 N/A N/A N/A 0.103±0.00 0.227±0.00 N/A N/A N/A 0.491±0.30 N/A N/A 0.305±0.08 0.108±0.06 0.242±0.00
ENSMUSG00000101551 ENSMUST00000188170 0.137±0.06 N/A N/A 0.022±0.00 0.253±0.11 0.111±0.00 0.076±0.03 0.193±0.04 0.039±0.03 0.100±0.02 N/A 0.279±0.23 0.070±0.05 0.046±0.00

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