C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated RING domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027393 Bard1-001 ENSMUSG00000026196 10090 - 1:71027498-71103146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027393
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027393 0.619±0.45 0.356±0.06 0.366±0.03 0.875±0.59 0.517±0.16 0.787±0.10 0.115±0.02 0.218±0.02 3.002±3.61 0.402±0.10 0.030±0.02 1.394±0.60 0.891±0.58 2.227±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AI CIL_0000AI_0003 CGP 1:70725715-71103146
CIL_0000AP CIL_0000AP_0003 CGP 1:71027498-71414910

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISO RNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0006281 IEA DNA repair
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031436 ISS BRCA1-BARD1 complex
GO:0042325 ISS regulation of phosphorylation
GO:0042803 ISS protein homodimerization activity
GO:0043065 ISS positive regulation of apoptotic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046826 ISS negative regulation of protein export from nucleus
GO:0046982 ISS protein heterodimerization activity
GO:0070531 IEA BRCA1-A complex
GO:0085020 ISS protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260947 BARD1-001 protein_coding Homo_sapiens 0 1629
ENST00000421162 BARD1-005 protein_coding Homo_sapiens 5.60519e-45 185
ENST00000432456 BARD1-004 protein_coding Homo_sapiens 0 372
ENST00000449967 BARD1-201 protein_coding Homo_sapiens 0 1349
ENST00000455743 BARD1-003 nonsense_mediated_decay Homo_sapiens 0 1256
ENST00000471590 BARD1-002 processed_transcript Homo_sapiens 0 475
ENST00000471787 BARD1-007 processed_transcript Homo_sapiens 0 353
ENST00000479904 BARD1-008 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000613192 BARD1-202 protein_coding Homo_sapiens 0 425
ENST00000613374 BARD1-203 protein_coding Homo_sapiens 0 760
ENST00000613706 BARD1-204 protein_coding Homo_sapiens 0 760
ENST00000617164 BARD1-205 protein_coding Homo_sapiens 0 1452
ENST00000619009 BARD1-206 protein_coding Homo_sapiens 0 473
ENST00000620057 BARD1-207 protein_coding Homo_sapiens 0 983

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