C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069134-ENSDARG00000076733 CGP 7955 9:41619720-41756765
GeneTranscriptPositionBiotype
ENSDARG00000069134 (vwc2l)
von Willebrand factor C domain-containing protein 2-like 		ENSDART00000100394 (vwc2l-201) 41621362-41690425 protein_coding
ENSDART00000132911 (vwc2l-001) 41619720-41690425 protein_coding
ENSDARG00000076733 (bard1)
BRCA1 associated RING domain 1 		ENSDART00000113160 (bard1-201) 41707564-41743206 protein_coding
ENSDART00000135134 (bard1-002) 41707678-41737966 protein_coding
ENSDART00000141979 (bard1-001) 41707564-41756765 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000AI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174453-ENSG00000138376 CGP 9606 2:214411065-214809711
GeneTranscriptPositionBiotype
ENSG00000138376 (BARD1)
BRCA1 associated RING domain 1 		ENST00000260947 (BARD1-001) 214725646-214809704 protein_coding
ENST00000421162 (BARD1-005) 214730411-214809687 protein_coding
ENST00000432456 (BARD1-004) 214728538-214730508 protein_coding
ENST00000449967 (BARD1-201) 214728553-214809642 protein_coding
ENST00000455743 (BARD1-003) 214728704-214809673 nonsense_mediated_decay
ENST00000465841 (BARD1-006) 214745712-214752478 retained_intron
ENST00000471590 (BARD1-002) 214728424-214731145 processed_transcript
ENST00000471787 (BARD1-007) 214780897-214809670 processed_transcript
ENST00000479904 (BARD1-008) 214796794-214809660 retained_intron
ENST00000613192 (BARD1-202) 214728676-214809683 protein_coding
ENST00000613374 (BARD1-203) 214725646-214809711 protein_coding
ENST00000613706 (BARD1-204) 214725646-214809711 protein_coding
ENST00000617164 (BARD1-205) 214725646-214809711 protein_coding
ENST00000619009 (BARD1-206) 214725646-214809711 protein_coding
ENST00000620057 (BARD1-207) 214728677-214809642 protein_coding
ENSG00000174453 (VWC2L)
von Willebrand factor C domain containing protein 2-like 		ENST00000312504 (VWC2L-001) 214411065-214578959 protein_coding
ENST00000427124 (VWC2L-003) 214411065-214578959 protein_coding
ENST00000477752 (VWC2L-002) 214411077-214415203 retained_intron
ENSG00000197585 (AC107218.3)
 ENST00000412896 (AC107218.3-002) 214250040-214684246 antisense
ENST00000437883 (AC107218.3-001) 214311602-214684246 antisense
ENSG00000224257 (VWC2L-IT1)
VWC2L intronic transcript 1 (non-protein coding) 		ENST00000416430 (VWC2L-IT1-001) 214510196-214536890 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0000AI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045648-ENSMUSG00000026196 CGP 10090 1:70725715-71103146
GeneTranscriptPositionBiotype
ENSMUSG00000026196 (Bard1)
BRCA1 associated RING domain 1 		ENSMUST00000027393 (Bard1-001) 71027498-71103146 protein_coding
ENSMUSG00000045648 (Vwc2l)
von Willebrand factor C domain-containing protein 2-like 		ENSMUST00000053922 (Vwc2l-001) 70725715-70885397 protein_coding
ENSMUST00000159205 (Vwc2l-003) 70725752-70732202 retained_intron
ENSMUST00000161937 (Vwc2l-002) 70725902-70885382 protein_coding
ENSMUST00000162182 (Vwc2l-004) 70725923-70882489 protein_coding
ENSMUSG00000089965 (Gm16236)
predicted gene 16236 		ENSMUST00000159588 (Gm16236-001) 71039652-71040030 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AI_0001ENSDARG00000069134ENSDART00000100394ENSDART00000132911ENSDARG00000076733ENSDART00000113160ENSDART00000135134ENSDART00000141979CIL_0000AI_0002ENSG00000138376ENST00000260947ENST00000421162ENST00000432456ENST00000449967ENST00000455743ENST00000465841ENST00000471590ENST00000471787ENST00000479904ENST00000613192ENST00000613374ENST00000613706ENST00000617164ENST00000619009ENST00000620057ENSG00000174453ENST00000312504ENST00000427124ENST00000477752ENSG00000197585ENST00000412896ENST00000437883ENSG00000224257ENST00000416430CIL_0000AI_0003ENSMUSG00000026196ENSMUST00000027393ENSMUSG00000045648ENSMUST00000053922ENSMUST00000159205ENSMUST00000161937ENSMUST00000162182ENSMUSG00000089965ENSMUST00000159588
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AI_0001ENSDARG00000069134ENSDART00000100394ENSDART00000132911ENSDARG00000076733ENSDART00000113160ENSDART00000135134ENSDART00000141979CIL_0000AI_0002ENSG00000138376ENST00000260947ENST00000449967ENST00000455743ENST00000471787ENST00000613192ENST00000613374ENST00000617164ENST00000619009ENST00000620057ENSG00000174453ENST00000312504ENST00000427124ENST00000477752ENSG00000197585ENST00000412896ENST00000437883ENSG00000224257ENST00000416430CIL_0000AI_0003ENSMUSG00000026196ENSMUST00000027393ENSMUSG00000045648ENSMUST00000053922ENSMUST00000159205ENSMUST00000161937ENSMUST00000162182ENSMUSG00000089965ENSMUST00000159588
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069134 ENSDART00000100394 N/A N/A N/A 0.236±0.00 N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000132911 N/A N/A N/A 1.114±0.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076733 ENSDART00000113160 N/A N/A N/A 0.078±0.04 N/A N/A N/A N/A 0.148±0.00 N/A 0.086±0.00 N/A N/A N/A
ENSDART00000135134 N/A N/A N/A 0.100±0.00 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141979 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138376 ENST00000260947 N/A N/A 0.391±0.00 0.452±0.24 N/A N/A 0.215±0.00 N/A N/A N/A 0.525±0.13 0.893±0.40 0.424±0.11 1.537±0.29
ENST00000421162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449967 N/A N/A N/A N/A N/A N/A 0.225±0.00 0.302±0.00 N/A N/A 0.321±0.00 1.054±0.00 N/A N/A
ENST00000455743 0.243±0.00 N/A N/A 0.321±0.00 N/A N/A N/A N/A 0.631±0.48 N/A N/A N/A N/A N/A
ENST00000465841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471787 N/A N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A N/A 1.259±0.00 N/A N/A N/A
ENST00000479904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613192 N/A N/A N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A
ENST00000613374 N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A 0.240±0.00 0.296±0.00 0.081±0.00 N/A
ENST00000613706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617164 0.317±0.00 0.353±0.00 N/A 0.580±0.00 N/A N/A 0.216±0.00 0.090±0.00 N/A 0.364±0.00 0.298±0.00 N/A 0.505±0.00 1.489±0.00
ENST00000619009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 0.458±0.00 1.128±0.00
ENST00000620057 N/A N/A N/A 1.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174453 ENST00000312504 N/A N/A N/A 0.145±0.00 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A
ENST00000427124 N/A N/A N/A 0.839±0.24 N/A 0.010±0.01 N/A N/A N/A N/A N/A N/A 0.007±0.00 0.035±0.00
ENST00000477752 N/A N/A 0.076±0.00 0.555±0.00 N/A 0.082±0.00 N/A N/A 0.214±0.00 0.106±0.00 N/A 0.005±0.00 N/A 0.031±0.00
ENSG00000197585 ENST00000412896 N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000437883 N/A 0.077±0.00 N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 0.041±0.00
ENSG00000224257 ENST00000416430 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.020±0.00 N/A N/A N/A 0.136±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026196 ENSMUST00000027393 0.619±0.45 0.356±0.06 0.366±0.03 0.875±0.59 0.517±0.16 0.787±0.10 0.115±0.02 0.218±0.02 3.002±3.61 0.402±0.10 0.030±0.02 1.394±0.60 0.891±0.58 2.227±0.98
ENSMUSG00000045648 ENSMUST00000053922 N/A N/A N/A 0.882±0.20 N/A N/A N/A 0.030±0.00 0.018±0.00 N/A N/A N/A N/A 0.026±0.00
ENSMUST00000159205 N/A 0.060±0.01 N/A 0.259±0.00 N/A 0.044±0.00 N/A 0.038±0.00 N/A N/A N/A 0.072±0.00 N/A 0.003±0.00
ENSMUST00000161937 N/A 0.038±0.00 N/A 0.200±0.00 N/A N/A N/A 0.013±0.00 0.026±0.01 N/A N/A 0.005±0.00 0.003±0.00 0.014±0.00
ENSMUST00000162182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00
ENSMUSG00000089965 ENSMUST00000159588 N/A N/A N/A 0.103±0.00 0.227±0.00 N/A N/A N/A 0.491±0.30 N/A N/A 0.305±0.08 0.108±0.06 0.242±0.00

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