C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6D, cGMP-specific, rod, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026239 Pde6d 10090 - 1:86542994-86582629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027444 Pde6d-001 86542994-86582547 protein_coding
  ENSMUST00000143674 Pde6d-002 86543022-86582629 nonsense_mediated_decay
  ENSMUST00000146220 Pde6d-004 86545392-86582547 protein_coding
  ENSMUST00000148683 Pde6d-003 86542994-86582547 retained_intron
  ENSMUST00000150653 Pde6d-005 86543520-86582517 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027444ENSMUST00000143674ENSMUST00000146220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027444 9.344±1.69 3.376±0.36 27.683±2.31 28.330±7.38 7.205±2.06 7.723±1.08 12.699±0.75 10.407±0.94 11.900±9.80 9.573±1.04 13.371±0.95 11.709±5.82 15.082±2.12 34.835±3.53
ENSMUST00000143674 0.953±0.00 1.008±0.00 N/A N/A 1.282±0.57 N/A N/A N/A N/A 0.883±0.00 N/A 1.029±0.06 N/A N/A
ENSMUST00000146220 N/A 10.204±3.43 N/A N/A N/A 2.903±0.00 N/A N/A N/A N/A N/A 5.655±4.16 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629
CIL_0007FL CIL_0007FL_0002 CGP 1:86542994-86609375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005095 IDA GTPase inhibitor activity
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0007601 IEA visual perception
GO:0007602 TAS phototransduction
GO:0008152 TAS:IEA metabolic process
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0031410 ISS cytoplasmic vesicle
GO:0033124 IDA regulation of GTP catabolic process
GO:0043086 IDA negative regulation of catalytic activity
GO:0047555 TAS 3',5'-cyclic-GMP phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074892 pde6d phosphodiesterase 6D, cGMP-specific, rod, delta protein_coding Danio_rerio
ENSG00000156973 PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta protein_coding Homo_sapiens

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