C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187514-ENSG00000156973 CGP 9606 2:231706895-231786272
GeneTranscriptPositionBiotype
ENSG00000144524 (COPS7B)
COP9 signalosome subunit 7B 		ENST00000350033 (COPS7B-001) 231786414-231809253 protein_coding
ENST00000357490 (COPS7B-011) 231786436-231791762 nonsense_mediated_decay
ENST00000373608 (COPS7B-002) 231786448-231809253 protein_coding
ENST00000409091 (COPS7B-023) 231781685-231807695 protein_coding
ENST00000409295 (COPS7B-006) 231781678-231807815 protein_coding
ENST00000410017 (COPS7B-014) 231786445-231808723 protein_coding
ENST00000410024 (COPS7B-015) 231781671-231807724 protein_coding
ENST00000412591 (COPS7B-009) 231786434-231798943 protein_coding
ENST00000412922 (COPS7B-005) 231786445-231808764 nonsense_mediated_decay
ENST00000413197 (COPS7B-003) 231786434-231809247 nonsense_mediated_decay
ENST00000432387 (COPS7B-012) 231786436-231791808 nonsense_mediated_decay
ENST00000436564 (COPS7B-020) 231788689-231796145 nonsense_mediated_decay
ENST00000449174 (COPS7B-022) 231796187-231808724 protein_coding
ENST00000449784 (COPS7B-017) 231781707-231796311 nonsense_mediated_decay
ENST00000450501 (COPS7B-010) 231786435-231791786 nonsense_mediated_decay
ENST00000452375 (COPS7B-018) 231781707-231791169 nonsense_mediated_decay
ENST00000461350 (COPS7B-007) 231789654-231808723 retained_intron
ENST00000466901 (COPS7B-019) 231781708-231791976 retained_intron
ENST00000474042 (COPS7B-021) 231791604-231807797 retained_intron
ENST00000479430 (COPS7B-016) 231781707-231788927 retained_intron
ENST00000488111 (COPS7B-008) 231793516-231808722 retained_intron
ENST00000492423 (COPS7B-013) 231786445-231789149 retained_intron
ENST00000611614 (COPS7B-201) 231781671-231809254 protein_coding
ENST00000620578 (COPS7B-202) 231786383-231809254 protein_coding
ENSG00000156973 (PDE6D)
phosphodiesterase 6D, cGMP-specific, rod, delta 		ENST00000287600 (PDE6D-001) 231732425-231781309 protein_coding
ENST00000409772 (PDE6D-005) 231732804-231781291 protein_coding
ENST00000428104 (PDE6D-004) 231737187-231786272 protein_coding
ENST00000477748 (PDE6D-002) 231778723-231781282 processed_transcript
ENST00000486044 (PDE6D-006) 231737422-231781263 retained_intron
ENSG00000187514 (PTMA)
prothymosin, alpha 		ENST00000341369 (PTMA-002) 231708516-231713536 protein_coding
ENST00000409115 (PTMA-001) 231708509-231713541 protein_coding
ENST00000409321 (PTMA-012) 231707684-231713108 protein_coding
ENST00000409683 (PTMA-007) 231708536-231713289 protein_coding
ENST00000410064 (PTMA-004) 231709781-231712856 protein_coding
ENST00000412128 (PTMA-008) 231710427-231713268 protein_coding
ENST00000440384 (PTMA-009) 231710491-231711383 protein_coding
ENST00000448874 (PTMA-011) 231707630-231713465 nonsense_mediated_decay
ENST00000466801 (PTMA-013) 231706895-231713013 processed_transcript
ENST00000467816 (PTMA-010) 231711131-231711978 retained_intron
ENST00000468027 (PTMA-006) 231708530-231712675 retained_intron
ENST00000481928 (PTMA-003) 231708530-231713506 retained_intron
ENST00000612829 (PTMA-201) 231710179-231713539 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0007FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026238-ENSMUSG00000026239 CGP 10090 1:86526726-86582629
GeneTranscriptPositionBiotype
ENSMUSG00000026238 (Ptma)
prothymosin alpha 		ENSMUST00000045897 (Ptma-001) 86526726-86530712 protein_coding
ENSMUST00000186255 (Ptma-005) 86526736-86530371 protein_coding
ENSMUST00000186932 (Ptma-004) 86526741-86529745 processed_transcript
ENSMUST00000188533 (Ptma-006) 86526807-86530209 protein_coding
ENSMUST00000188699 (Ptma-003) 86526737-86529527 protein_coding
ENSMUSG00000026239 (Pde6d)
phosphodiesterase 6D, cGMP-specific, rod, delta 		ENSMUST00000027444 (Pde6d-001) 86542994-86582547 protein_coding
ENSMUST00000143674 (Pde6d-002) 86543022-86582629 nonsense_mediated_decay
ENSMUST00000146220 (Pde6d-004) 86545392-86582547 protein_coding
ENSMUST00000148683 (Pde6d-003) 86542994-86582547 retained_intron
ENSMUST00000150653 (Pde6d-005) 86543520-86582517 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FM_0001ENSG00000144524ENST00000350033ENST00000410017ENST00000410024ENST00000412922ENST00000413197ENST00000449174ENST00000461350ENST00000488111ENST00000492423ENST00000611614ENSG00000156973ENST00000287600ENST00000477748ENSG00000187514ENST00000341369ENST00000409115ENST00000409321ENST00000412128ENST00000448874ENST00000468027CIL_0007FM_0002ENSMUSG00000026238ENSMUST00000045897ENSMUST00000186255ENSMUST00000186932ENSMUST00000188533ENSMUSG00000026239ENSMUST00000027444ENSMUST00000143674ENSMUST00000146220
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144524 ENST00000350033 1.979±0.00 N/A N/A 2.958±1.61 2.009±0.00 1.688±0.00 N/A N/A 0.829±0.00 1.106±0.00 N/A 2.664±2.00 2.171±0.18 N/A
ENST00000357490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410017 2.284±0.00 5.468±0.00 N/A N/A 3.406±0.00 2.145±0.00 1.858±0.00 3.659±0.00 1.203±0.00 2.335±0.00 2.798±1.23 6.360±0.51 3.776±0.03 11.650±0.00
ENST00000410024 N/A N/A N/A N/A N/A 1.269±0.00 N/A 0.840±0.00 N/A N/A N/A 0.947±0.00 N/A N/A
ENST00000412591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412922 N/A 4.101±0.00 N/A 6.539±0.00 2.897±0.00 2.406±0.00 2.569±0.00 2.351±0.00 1.759±0.00 3.901±0.00 N/A 6.247±0.99 4.287±0.61 12.418±3.60
ENST00000413197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.213±0.00 N/A
ENST00000432387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449174 N/A N/A N/A N/A N/A 2.258±0.00 N/A N/A N/A N/A N/A 12.727±0.00 8.619±0.00 28.782±0.00
ENST00000449784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461350 N/A N/A 1.243±0.00 N/A 0.448±0.00 0.726±0.00 0.516±0.00 0.246±0.00 N/A 0.832±0.00 N/A 1.295±0.62 N/A N/A
ENST00000466901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488111 N/A N/A 0.594±0.00 N/A 0.666±0.00 N/A N/A 0.625±0.00 1.480±0.00 N/A N/A N/A N/A N/A
ENST00000492423 N/A N/A N/A N/A 2.238±0.00 2.122±0.00 N/A N/A N/A N/A N/A 3.057±0.00 N/A N/A
ENST00000611614 N/A N/A N/A N/A N/A N/A N/A 1.670±0.00 N/A N/A N/A N/A N/A N/A
ENST00000620578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156973 ENST00000287600 8.042±0.00 9.827±0.00 1.205±0.00 10.320±5.31 3.683±2.37 4.596±3.16 3.498±2.49 5.368±4.66 2.551±0.24 5.063±2.74 2.815±1.75 8.806±5.56 13.218±5.79 17.581±0.00
ENST00000409772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477748 N/A N/A N/A N/A N/A N/A N/A 0.541±0.00 N/A N/A N/A N/A N/A 19.631±5.52
ENST00000486044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187514 ENST00000341369 80.361±0.00 180.379±0.00 N/A 39.649±0.00 53.952±0.00 68.159±48.25 10.620±0.00 28.173±17.18 26.361±3.30 113.411±0.00 11.373±0.00 56.454±27.40 N/A 37.816±21.83
ENST00000409115 122.209±0.00 N/A 46.702±0.00 67.536±0.00 78.213±33.72 83.663±11.37 13.461±3.74 57.024±0.00 121.342±0.00 92.846±0.00 11.633±2.63 290.321±203.68 473.141±139.84 59.044±13.44
ENST00000409321 327.208±0.00 685.156±0.00 N/A 193.071±0.00 233.502±0.00 476.133±0.00 26.189±0.00 159.180±0.00 71.081±0.00 445.599±0.00 25.577±0.00 515.543±0.00 N/A 220.026±0.00
ENST00000409683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412128 144.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.086±0.00
ENST00000440384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448874 N/A 157.790±0.00 N/A 107.436±0.00 77.497±0.00 187.846±0.00 36.026±0.00 215.827±0.00 68.344±0.00 292.331±0.00 23.597±0.00 54.392±0.00 N/A 135.871±0.00
ENST00000466801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468027 N/A N/A N/A 47.582±0.00 N/A N/A 11.134±0.00 N/A N/A N/A N/A 54.892±0.00 N/A N/A
ENST00000481928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026238 ENSMUST00000045897 177.464±110.53 266.963±42.93 447.005±23.43 582.882±376.47 148.722±59.38 186.215±41.38 39.725±5.95 159.275±14.21 535.461±608.00 208.762±0.93 28.223±4.40 465.811±174.20 439.963±263.40 34.169±9.98
ENSMUST00000186255 N/A N/A N/A 67.866±0.00 N/A N/A N/A N/A N/A N/A N/A 384.717±0.00 255.696±135.22 27.813±0.00
ENSMUST00000186932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 224.449±0.00
ENSMUST00000188533 N/A N/A N/A N/A N/A N/A N/A N/A 165.892±0.00 N/A N/A N/A N/A 29.484±0.00
ENSMUST00000188699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026239 ENSMUST00000027444 9.344±1.69 3.376±0.36 27.683±2.31 28.330±7.38 7.205±2.06 7.723±1.08 12.699±0.75 10.407±0.94 11.900±9.80 9.573±1.04 13.371±0.95 11.709±5.82 15.082±2.12 34.835±3.53
ENSMUST00000143674 0.953±0.00 1.008±0.00 N/A N/A 1.282±0.57 N/A N/A N/A N/A 0.883±0.00 N/A 1.029±0.06 N/A N/A
ENSMUST00000146220 N/A 10.204±3.43 N/A N/A N/A 2.903±0.00 N/A N/A N/A N/A N/A 5.655±4.16 N/A N/A
ENSMUST00000148683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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