C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6D, cGMP-specific, rod, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027444 Pde6d-001 ENSMUSG00000026239 10090 - 1:86542994-86582547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027444 9.344±1.69 3.376±0.36 27.683±2.31 28.330±7.38 7.205±2.06 7.723±1.08 12.699±0.75 10.407±0.94 11.900±9.80 9.573±1.04 13.371±0.95 11.709±5.82 15.082±2.12 34.835±3.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629
CIL_0007FL CIL_0007FL_0002 CGP 1:86542994-86609375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005095 IDA GTPase inhibitor activity
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0007601 IEA visual perception
GO:0007602 TAS phototransduction
GO:0008152 TAS:IEA metabolic process
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0031410 ISS cytoplasmic vesicle
GO:0033124 IDA regulation of GTP catabolic process
GO:0043086 IDA negative regulation of catalytic activity
GO:0047555 TAS 3',5'-cyclic-GMP phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287600 PDE6D-001 protein_coding Homo_sapiens 0 1057
ENST00000409772 PDE6D-005 protein_coding Homo_sapiens 0 588
ENST00000428104 PDE6D-004 protein_coding Homo_sapiens 0 494
ENST00000477748 PDE6D-002 processed_transcript Homo_sapiens 0 231
ENST00000486044 PDE6D-006 retained_intron Homo_sapiens 0 542

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