C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phenylalanyl-tRNA synthetase, beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026245 Farsb 10090 - 1:78417975-78488897 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068333 Farsb-001 78425068-78488897 protein_coding
  ENSMUST00000170217 Farsb-002 78417975-78488859 protein_coding
  ENSMUST00000188247 Farsb-006 78462996-78488859 protein_coding
  ENSMUST00000189529 Farsb-004 78425085-78488862 nonsense_mediated_decay
  ENSMUST00000189931 Farsb-007 78471186-78488795 processed_transcript
  ENSMUST00000190441 Farsb-003 78472570-78488842 protein_coding
  ENSMUST00000191021 Farsb-005 78477871-78488837 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068333ENSMUST00000170217ENSMUST00000188247ENSMUST00000189529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068333 12.934±1.13 1.362±0.13 20.906±0.83 24.759±5.34 6.624±2.96 N/A 10.727±2.12 5.666±1.04 21.240±15.41 N/A 15.850±1.70 9.069±4.07 27.351±7.52 9.765±2.34
ENSMUST00000170217 3.951±1.57 1.708±0.40 N/A 3.154±0.00 2.614±0.86 15.457±0.79 2.193±0.00 6.947±0.88 N/A 9.773±0.70 N/A 6.466±2.20 6.963±2.95 4.794±1.83
ENSMUST00000188247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.309±0.85 N/A N/A N/A
ENSMUST00000189529 2.302±0.00 3.854±0.70 N/A 4.627±0.60 3.937±1.45 N/A 1.951±0.00 5.039±1.35 5.033±2.95 N/A 3.175±0.00 4.749±1.01 8.375±0.00 2.421±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LF CIL_0008LF_0002 VISTA 1:77884098-78485294
CIL_000464 CIL_000464_0002 CGP 1:78101267-78420289
CIL_00041I CIL_00041I_0003 CGP 1:78310345-78488897

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0003723 IEA RNA binding
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016864 farsb phenylalanyl-tRNA synthetase, beta subunit protein_coding Danio_rerio
ENSG00000116120 FARSB phenylalanyl-tRNA synthetase, beta subunit protein_coding Homo_sapiens

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