C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000464_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028348-ENSDARG00000079608 CGP 7955 15:40690662-40787500
GeneTranscriptPositionBiotype
ENSDARG00000028348 (pax3b)
paired box gene 3b
ENSDART00000015843 (pax3b-201) 40690662-40733987 protein_coding
ENSDARG00000079608 (SGPP2)
sphingosine-1-phosphate phosphatase 2
ENSDART00000114801 (SGPP2-201) 40761733-40787500 protein_coding
CIL_000464_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004872-ENSMUSG00000032908 CGP 10090 1:78101267-78420289
GeneTranscriptPositionBiotype
ENSMUSG00000004872 (Pax3)
paired box 3
ENSMUST00000004994 (Pax3-002) 78101267-78196838 protein_coding
ENSMUST00000087086 (Pax3-001) 78101270-78197134 protein_coding
ENSMUST00000172555 (Pax3-003) 78183456-78197113 processed_transcript
ENSMUSG00000026245 (Farsb)
phenylalanyl-tRNA synthetase, beta subunit
ENSMUST00000068333 (Farsb-001) 78425068-78488897 protein_coding
ENSMUST00000170217 (Farsb-002) 78417975-78488859 protein_coding
ENSMUST00000188247 (Farsb-006) 78462996-78488859 protein_coding
ENSMUST00000189529 (Farsb-004) 78425085-78488862 nonsense_mediated_decay
ENSMUST00000189931 (Farsb-007) 78471186-78488795 processed_transcript
ENSMUST00000190441 (Farsb-003) 78472570-78488842 protein_coding
ENSMUST00000191021 (Farsb-005) 78477871-78488837 retained_intron
ENSMUSG00000032908 (Sgpp2)
sphingosine-1-phosphate phosphotase 2
ENSMUST00000036172 (Sgpp2-001) 78310345-78420289 protein_coding
ENSMUSG00000099561 (RP24-404O8.1)
predicted gene 28410
ENSMUST00000188113 (RP24-404O8.1-001) 78325628-78340106 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000464_0001ENSDARG00000028348ENSDART00000015843ENSDARG00000079608ENSDART00000114801CIL_000464_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000026245ENSMUST00000068333ENSMUST00000170217ENSMUST00000188247ENSMUST00000189529ENSMUST00000189931ENSMUST00000190441ENSMUST00000191021ENSMUSG00000032908ENSMUST00000036172ENSMUSG00000099561ENSMUST00000188113
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000464_0001ENSDARG00000028348ENSDART00000015843ENSDARG00000079608ENSDART00000114801CIL_000464_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000026245ENSMUST00000068333ENSMUST00000170217ENSMUST00000188247ENSMUST00000189529ENSMUSG00000032908ENSMUST00000036172ENSMUSG00000099561ENSMUST00000188113
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028348 ENSDART00000015843 N/A N/A N/A 0.235±0.00 N/A N/A 0.124±0.13 N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENSDARG00000079608 ENSDART00000114801 N/A N/A N/A 0.186±0.08 N/A N/A 0.124±0.07 N/A 0.062±0.00 N/A 0.094±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004872 ENSMUST00000004994 N/A N/A 0.003±0.00 0.513±0.38 0.101±0.00 N/A N/A 0.055±0.00 0.010±0.01 0.016±0.00 0.031±0.02 0.049±0.03 0.112±0.05 0.172±0.08
ENSMUST00000087086 N/A N/A N/A 1.375±1.07 0.018±0.00 N/A 0.035±0.01 0.038±0.00 0.011±0.01 0.020±0.00 0.053±0.01 N/A 0.078±0.04 0.065±0.02
ENSMUST00000172555 N/A N/A 0.002±0.00 N/A 0.025±0.00 0.058±0.04 N/A 0.005±0.00 0.007±0.00 0.014±0.00 0.011±0.00 0.059±0.00 0.023±0.00 N/A
ENSMUSG00000026245 ENSMUST00000068333 12.934±1.13 1.362±0.13 20.906±0.83 24.759±5.34 6.624±2.96 N/A 10.727±2.12 5.666±1.04 21.240±15.41 N/A 15.850±1.70 9.069±4.07 27.351±7.52 9.765±2.34
ENSMUST00000170217 3.951±1.57 1.708±0.40 N/A 3.154±0.00 2.614±0.86 15.457±0.79 2.193±0.00 6.947±0.88 N/A 9.773±0.70 N/A 6.466±2.20 6.963±2.95 4.794±1.83
ENSMUST00000188247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.309±0.85 N/A N/A N/A
ENSMUST00000189529 2.302±0.00 3.854±0.70 N/A 4.627±0.60 3.937±1.45 N/A 1.951±0.00 5.039±1.35 5.033±2.95 N/A 3.175±0.00 4.749±1.01 8.375±0.00 2.421±0.00
ENSMUST00000189931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032908 ENSMUST00000036172 2.508±0.12 0.934±0.30 N/A 3.153±0.00 N/A 44.296±10.11 N/A 7.980±1.02 N/A 17.494±0.22 N/A 4.512±1.41 6.310±2.83 4.682±0.64
ENSMUSG00000099561 ENSMUST00000188113 0.026±0.00 0.144±0.07 0.006±0.00 0.037±0.02 N/A 0.206±0.07 N/A 0.081±0.02 0.006±0.00 0.063±0.02 N/A 0.627±0.26 0.045±0.00 0.144±0.11

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