C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, gamma polypeptide
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026253 Chrng 10090 + 1:87204657-87212694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027470 Chrng-001 87205811-87212694 protein_coding
  ENSMUST00000185763 Chrng-002 87204657-87208296 protein_coding
  ENSMUST00000186038 Chrng-003 87205885-87208295 protein_coding
  ENSMUST00000188796 Chrng-005 87205810-87208295 protein_coding
  ENSMUST00000189392 Chrng-004 87206074-87208595 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027470ENSMUST00000185763ENSMUST00000186038ENSMUST00000188796ENSMUST00000189392
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027470 0.015±0.00 0.032±0.00 0.008±0.00 0.119±0.10 0.039±0.01 0.018±0.00 0.016±0.01 0.020±0.00 0.146±0.27 0.018±0.00 0.037±0.01 0.162±0.09 0.028±0.02 0.013±0.00
ENSMUST00000185763 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A 0.357±0.22 N/A 0.068±0.00
ENSMUST00000186038 N/A N/A 0.019±0.00 0.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 0.145±0.00 N/A 0.087±0.00
ENSMUST00000189392 N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A 0.037±0.00 N/A 0.035±0.00 0.050±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HU CIL_0003HU_0002 CGP 1:87190607-87212694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006812 IGI cation transport
GO:0030054 IEA cell junction
GO:0042391 IGI regulation of membrane potential
GO:0045211 IDA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000196811 CHRNG cholinergic receptor, nicotinic, gamma (muscle) protein_coding Homo_sapiens

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