C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, gamma polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027470 Chrng-001 ENSMUSG00000026253 10090 + 1:87205811-87212694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027470 0.015±0.00 0.032±0.00 0.008±0.00 0.119±0.10 0.039±0.01 0.018±0.00 0.016±0.01 0.020±0.00 0.146±0.27 0.018±0.00 0.037±0.01 0.162±0.09 0.028±0.02 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HU CIL_0003HU_0002 CGP 1:87190607-87212694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006812 IGI cation transport
GO:0030054 IEA cell junction
GO:0042391 IGI regulation of membrane potential
GO:0045211 IDA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293780 CHRNE-001 protein_coding Homo_sapiens 0.000000002 69
ENST00000381365 C17orf107-001 protein_coding Homo_sapiens 0.00000003 66
ENST00000389492 CHRNG-004 protein_coding Homo_sapiens 0 1158
ENST00000389494 CHRNG-001 protein_coding Homo_sapiens 0 1816
ENST00000485094 CHRNG-003 retained_intron Homo_sapiens 0 645

Loading