C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026270 Capn10 10090 + 1:92934376-92947941 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027488 Capn10-001 92934376-92947941 protein_coding
  ENSMUST00000117814 Capn10-002 92934766-92940972 protein_coding
  ENSMUST00000128429 Capn10-004 92942704-92943744 retained_intron
  ENSMUST00000136598 Capn10-006 92946885-92947590 retained_intron
  ENSMUST00000152983 Capn10-003 92934833-92947929 nonsense_mediated_decay
  ENSMUST00000153828 Capn10-005 92946553-92946955 processed_transcript
  ENSMUST00000187342 Capn10-007 92940459-92945103 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027488ENSMUST00000117814ENSMUST00000152983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027488 6.125±0.97 9.498±2.23 7.456±0.67 14.344±10.12 7.312±1.57 10.984±2.29 2.462±0.40 11.997±1.22 10.930±4.04 9.203±1.63 1.645±0.33 12.098±6.06 6.421±3.84 13.970±0.37
ENSMUST00000117814 2.633±0.38 8.599±0.80 2.886±0.52 5.373±0.81 2.244±0.00 4.688±0.58 0.877±0.21 5.349±1.22 2.099±0.29 N/A N/A 4.566±0.13 4.126±1.38 N/A
ENSMUST00000152983 N/A N/A N/A 5.703±0.00 N/A N/A N/A N/A N/A N/A 0.730±0.26 5.002±2.31 5.816±1.78 7.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0002 VISTA 1:92418794-93021273
CIL_0009AE CIL_0009AE_0002 VISTA 1:92485614-93089442
CIL_0003NU CIL_0003NU_0002 CGP 1:92910783-92947941
CIL_0003NA CIL_0003NA_0002 CGP 1:92934376-92986391

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005623 IEA cell
GO:0005737 IBA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006508 IBA proteolysis
GO:0031532 IMP actin cytoskeleton reorganization
GO:0032024 IEA positive regulation of insulin secretion
GO:0032388 IMP positive regulation of intracellular transport
GO:0032869 IMP cellular response to insulin stimulus
GO:0046326 IMP positive regulation of glucose import
GO:0097050 IMP type B pancreatic cell apoptotic process
GO:2000676 IMP positive regulation of type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076634 capn10 calpain 10 protein_coding Danio_rerio
ENSG00000142330 CAPN10 calpain 10 protein_coding Homo_sapiens

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