C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027488 Capn10-001 ENSMUSG00000026270 10090 + 1:92934376-92947941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027488 6.125±0.97 9.498±2.23 7.456±0.67 14.344±10.12 7.312±1.57 10.984±2.29 2.462±0.40 11.997±1.22 10.930±4.04 9.203±1.63 1.645±0.33 12.098±6.06 6.421±3.84 13.970±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0002 VISTA 1:92418794-93021273
CIL_0009AE CIL_0009AE_0002 VISTA 1:92485614-93089442
CIL_0003NU CIL_0003NU_0002 CGP 1:92910783-92947941
CIL_0003NA CIL_0003NA_0002 CGP 1:92934376-92986391

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005623 IEA cell
GO:0005737 IBA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006508 IBA proteolysis
GO:0031532 IMP actin cytoskeleton reorganization
GO:0032024 IEA positive regulation of insulin secretion
GO:0032388 IMP positive regulation of intracellular transport
GO:0032869 IMP cellular response to insulin stimulus
GO:0046326 IMP positive regulation of glucose import
GO:0097050 IMP type B pancreatic cell apoptotic process
GO:2000676 IMP positive regulation of type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270361 CAPN10-008 nonsense_mediated_decay Homo_sapiens 0 1729
ENST00000354082 CAPN10-007 protein_coding Homo_sapiens 0 1199
ENST00000357048 CAPN10-003 nonsense_mediated_decay Homo_sapiens 0 1376
ENST00000391983 CAPN10-009 nonsense_mediated_decay Homo_sapiens 0 1378
ENST00000391984 CAPN10-001 protein_coding Homo_sapiens 0 1788
ENST00000404753 CAPN10-005 protein_coding Homo_sapiens 0 1700
ENST00000416591 CAPN10-004 nonsense_mediated_decay Homo_sapiens 0 1197
ENST00000465943 CAPN10-013 retained_intron Homo_sapiens 0 281
ENST00000494738 CAPN10-010 retained_intron Homo_sapiens 0 654

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