C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDC42 binding protein kinase alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026490 Cdc42bpa 10090 + 1:179960472-180165603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076687 Cdc42bpa-003 179961110-180162166 protein_coding
  ENSMUST00000097450 Cdc42bpa-004 179961110-180162166 protein_coding
  ENSMUST00000097453 Cdc42bpa-002 179960472-180163156 protein_coding
  ENSMUST00000111117 Cdc42bpa-001 179960585-180165603 protein_coding
  ENSMUST00000129754 Cdc42bpa-016 180161007-180162294 retained_intron
  ENSMUST00000132894 Cdc42bpa-006 179990740-180038386 retained_intron
  ENSMUST00000133890 Cdc42bpa-008 180101144-180162588 protein_coding
  ENSMUST00000134959 Cdc42bpa-005 179960760-180111891 processed_transcript
  ENSMUST00000135056 Cdc42bpa-010 180109265-180149237 protein_coding
  ENSMUST00000139002 Cdc42bpa-013 180084483-180094846 retained_intron
  ENSMUST00000143161 Cdc42bpa-012 180111357-180116307 retained_intron
  ENSMUST00000143176 Cdc42bpa-009 180109192-180165602 protein_coding
  ENSMUST00000143350 Cdc42bpa-007 179975899-180041641 processed_transcript
  ENSMUST00000145181 Cdc42bpa-014 180111339-180136724 protein_coding
  ENSMUST00000145274 Cdc42bpa-015 180123766-180138552 processed_transcript
  ENSMUST00000152582 Cdc42bpa-011 180107017-180118957 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000076687ENSMUST00000097450ENSMUST00000097453ENSMUST00000111117ENSMUST00000133890ENSMUST00000134959ENSMUST00000143176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000076687 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.240±1.88 4.406±2.71 N/A
ENSMUST00000097450 N/A N/A N/A 17.446±0.00 N/A N/A N/A N/A N/A 3.607±0.00 2.449±0.00 4.640±0.00
ENSMUST00000097453 4.816±0.00 N/A N/A 17.587±0.00 N/A N/A N/A N/A 6.895±0.69 4.442±0.00 2.902±1.39 2.798±0.00
ENSMUST00000111117 3.373±0.00 N/A 4.133±0.84 6.335±1.62 N/A N/A N/A 2.163±0.24 N/A N/A 0.622±0.00 N/A
ENSMUST00000133890 N/A 13.838±0.00 N/A N/A 6.924±0.00 7.505±0.93 N/A N/A 11.152±1.36 10.880±2.00 3.551±0.48 3.102±0.20
ENSMUST00000134959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.639±0.00 N/A
ENSMUST00000143176 8.320±0.36 N/A 10.421±1.08 14.116±0.33 N/A N/A 7.185±0.29 3.893±1.67 12.224±0.73 4.408±0.43 2.535±0.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000985 CIL_000985_0002 VISTA 1:179908053-180512549

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0000287 IEA magnesium ion binding
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005083 IEA small GTPase regulator activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0007097 IMP nuclear migration
GO:0016477 IEA cell migration
GO:0031032 IEA actomyosin structure organization
GO:0031532 IEA actin cytoskeleton reorganization
GO:0035556 IEA intracellular signal transduction
GO:0042641 IEA actomyosin
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding
GO:0050790 IEA regulation of catalytic activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016464 CDC42BPA (1 of 2) CDC42 binding protein kinase alpha (DMPK-like) protein_coding Danio_rerio
ENSDARG00000058760 CDC42BPA (2 of 2) CDC42 binding protein kinase alpha (DMPK-like) protein_coding Danio_rerio
ENSG00000143776 CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) protein_coding Homo_sapiens

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