C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM domain containing 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026657 Frmd4a 10090 + 2:4017717-4614043 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075767 Frmd4a-001 4400975-4614043 protein_coding
  ENSMUST00000091497 Frmd4a-007 4152872-4613942 protein_coding
  ENSMUST00000115037 Frmd4a-016 4389614-4529798 protein_coding
  ENSMUST00000115039 Frmd4a-002 4401471-4537735 retained_intron
  ENSMUST00000123919 Frmd4a-008 4473194-4498103 retained_intron
  ENSMUST00000132710 Frmd4a-012 4152863-4171425 processed_transcript
  ENSMUST00000137809 Frmd4a-011 4017734-4021904 retained_intron
  ENSMUST00000138735 Frmd4a-010 4017717-4167006 processed_transcript
  ENSMUST00000141746 Frmd4a-003 4389616-4433512 retained_intron
  ENSMUST00000142452 Frmd4a-005 4559775-4588179 retained_intron
  ENSMUST00000147156 Frmd4a-004 4300885-4538897 retained_intron
  ENSMUST00000153160 Frmd4a-006 4559754-4597989 retained_intron
  ENSMUST00000175669 Frmd4a-009 4300518-4572439 protein_coding
  ENSMUST00000175944 Frmd4a-014 4332466-4594640 protein_coding
  ENSMUST00000176803 Frmd4a-018 4301003-4560260 nonsense_mediated_decay
  ENSMUST00000176828 Frmd4a-015 4559756-4612584 protein_coding
  ENSMUST00000176864 Frmd4a-019 4566176-4594676 nonsense_mediated_decay
  ENSMUST00000176962 Frmd4a-017 4401437-4431364 retained_intron
  ENSMUST00000177457 Frmd4a-013 4017744-4614041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075767ENSMUST00000091497ENSMUST00000176828ENSMUST00000177457
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075767 N/A 0.714±0.00 0.836±0.00 14.837±1.79 N/A N/A 1.574±0.06 N/A 2.234±0.00 N/A 0.083±0.00 N/A 1.440±0.00 0.570±0.15
ENSMUST00000091497 2.285±0.36 0.527±0.00 2.287±0.53 7.167±0.87 1.063±0.21 0.711±0.09 1.108±0.00 0.784±0.12 2.741±2.57 5.316±1.03 0.192±0.06 1.482±0.05 6.482±0.16 0.902±0.00
ENSMUST00000176828 3.620±0.76 4.019±1.13 0.971±0.26 8.308±0.00 6.260±2.99 3.951±1.33 2.086±0.48 1.748±0.92 2.506±2.30 16.024±3.66 0.388±0.00 7.656±2.59 3.603±0.98 1.241±0.48
ENSMUST00000177457 N/A N/A N/A 18.594±0.00 N/A N/A 1.068±0.00 N/A 1.443±0.00 N/A 0.308±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000870 CIL_000870_0002 VISTA 2:3997327-4601456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005923 IDA tight junction
GO:0030674 IPI protein binding, bridging
GO:0090162 IGI establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042249 FRMD4A FERM domain containing 4A protein_coding Danio_rerio
ENSG00000151474 FRMD4A FERM domain containing 4A protein_coding Homo_sapiens

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