C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176828 Frmd4a-015 ENSMUSG00000026657 10090 + 2:4559756-4612584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176828 3.620±0.76 4.019±1.13 0.971±0.26 8.308±0.00 6.260±2.99 3.951±1.33 2.086±0.48 1.748±0.92 2.506±2.30 16.024±3.66 0.388±0.00 7.656±2.59 3.603±0.98 1.241±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000870 CIL_000870_0002 VISTA 2:3997327-4601456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005923 IDA tight junction
GO:0030674 IPI protein binding, bridging
GO:0090162 IGI establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264546 FRMD4A-005 protein_coding Homo_sapiens 0 968
ENST00000342409 FRMD4A-004 protein_coding Homo_sapiens 0 470
ENST00000357447 FRMD4A-003 protein_coding Homo_sapiens 0 2952
ENST00000358621 FRMD4A-201 protein_coding Homo_sapiens 0 2952
ENST00000419851 RP11-295P9.3-003 retained_intron Homo_sapiens 0 470
ENST00000475325 FRMD4A-011 processed_transcript Homo_sapiens 0 643
ENST00000477221 FRMD4A-008 processed_transcript Homo_sapiens 0 357
ENST00000492155 FRMD4A-007 processed_transcript Homo_sapiens 0 529
ENST00000495956 FRMD4A-010 processed_transcript Homo_sapiens 0 1271
ENST00000594575 RP11-295P9.3-014 retained_intron Homo_sapiens 0 246
ENST00000597920 RP11-295P9.3-015 retained_intron Homo_sapiens 4e-38 163
ENST00000610395 RP11-295P9.3-026 retained_intron Homo_sapiens 0 331
ENST00000613191 RP11-295P9.3-038 processed_transcript Homo_sapiens 0 263
ENST00000613332 RP11-295P9.3-044 processed_transcript Homo_sapiens 9.99967e-42 174
ENST00000619389 RP11-295P9.3-030 processed_transcript Homo_sapiens 1e-39 167
ENST00000621532 RP11-295P9.3-029 retained_intron Homo_sapiens 1.96182e-44 183

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