C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenophosphate synthetase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115019 Sephs1-002 ENSMUSG00000026662 10090 + 2:4882245-4908137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115019 12.277±2.80 10.762±1.74 7.361±0.00 15.607±10.94 9.688±0.76 6.493±0.50 3.885±0.49 10.087±1.18 6.962±2.93 11.097±0.59 4.137±0.23 14.016±4.89 6.741±4.50 3.146±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000965 CIL_000965_0002 VISTA 2:4287585-4888762
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004756 IEA selenide, water dikinase activity
GO:0005524 IEA ATP binding
GO:0005886 ISS plasma membrane
GO:0008150 ND biological_process
GO:0016310 IEA phosphorylation
GO:0031965 ISS nuclear membrane
GO:0042803 ISS protein homodimerization activity
GO:0046982 ISS protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327347 SEPHS1-001 protein_coding Homo_sapiens 0 2560
ENST00000378614 SEPHS1-002 protein_coding Homo_sapiens 0 1048
ENST00000413411 SEPHS1-003 protein_coding Homo_sapiens 0 737
ENST00000425947 SEPHS1-004 protein_coding Homo_sapiens 0 374
ENST00000426891 SEPHS1P1-001 processed_pseudogene Homo_sapiens 0 850
ENST00000443084 SEPHS1P6-001 processed_pseudogene Homo_sapiens 0 1319
ENST00000446112 SEPHS1P4-001 processed_pseudogene Homo_sapiens 0 1365
ENST00000494329 SEPHS1-005 processed_transcript Homo_sapiens 0 455
ENST00000545675 SEPHS1-201 protein_coding Homo_sapiens 0 2235
ENST00000557145 RP11-164C12.1-001 processed_pseudogene Homo_sapiens 0 651

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