C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132158 Vamp4-003 ENSMUSG00000026696 10090 + 1:162570515-162599084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000132158
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000132158 1.516±0.71 4.215±2.08 4.327±0.63 2.061±0.36 1.432±0.15 0.627±0.25 1.691±0.16 0.853±0.39 2.240±0.00 0.844±0.17 3.051±1.51 0.738±0.22 7.033±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0002 VISTA 1:162530457-163133967

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0031201 IDA SNARE complex
GO:0035493 IEA SNARE complex assembly
GO:0042996 IMP regulation of Golgi to plasma membrane protein transport
GO:0043001 IMP Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236192 VAMP4-004 protein_coding Homo_sapiens 0 708
ENST00000367740 VAMP4-002 protein_coding Homo_sapiens 0 652
ENST00000474047 VAMP4-001 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000482519 VAMP4-003 processed_transcript Homo_sapiens 0 398

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