C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135241 Vamp4-002 ENSMUSG00000026696 10090 + 1:162570590-162595365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135241 5.106±0.82 12.481±2.70 7.925±1.62 6.576±1.21 7.880±3.02 9.488±2.63 3.117±0.29 6.379±1.11 3.905±1.15 8.420±1.62 2.968±0.31 6.668±2.38 4.756±1.62 9.157±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0002 VISTA 1:162530457-163133967

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0016021 IEA integral component of membrane
GO:0031201 IDA SNARE complex
GO:0042996 IMP regulation of Golgi to plasma membrane protein transport
GO:0043001 IMP Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236192 VAMP4-004 protein_coding Homo_sapiens 0 1280
ENST00000367740 VAMP4-002 protein_coding Homo_sapiens 0 1051
ENST00000474047 VAMP4-001 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000482519 VAMP4-003 processed_transcript Homo_sapiens 0 398

Loading