C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050010 Vamp4-001 ENSMUSG00000026696 10090 + 1:162570828-162599078 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000050010
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000050010 2.155±0.39 1.348±0.00 4.353±2.11 1.890±0.54 1.543±0.19 2.006±0.24 1.016±0.31 2.450±0.19 3.324±1.15 0.773±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0002 VISTA 1:162530457-163133967

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0016021 IEA integral component of membrane
GO:0031201 IDA SNARE complex
GO:0042996 IMP regulation of Golgi to plasma membrane protein transport
GO:0043001 IMP Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236192 VAMP4-004 protein_coding Homo_sapiens 0 608
ENST00000367740 VAMP4-002 protein_coding Homo_sapiens 0 593
ENST00000474047 VAMP4-001 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000482519 VAMP4-003 processed_transcript Homo_sapiens 0 346

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