C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA aspartic acid methyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026723 Trdmt1 10090 - 2:13509014-13544664 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028055 Trdmt1-003 13511538-13544632 processed_transcript
  ENSMUST00000124488 Trdmt1-001 13509014-13544664 protein_coding
  ENSMUST00000144957 Trdmt1-002 13522120-13544663 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028055ENSMUST00000124488ENSMUST00000144957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028055 N/A N/A 2.625±0.43 0.951±0.00 N/A 0.463±0.00 N/A N/A 1.489±0.48 N/A 0.567±0.07 1.830±0.68 2.119±1.10 1.985±0.00
ENSMUST00000124488 1.001±0.32 0.538±0.12 1.133±0.41 1.402±0.76 1.354±0.36 0.815±0.30 1.305±0.38 2.239±0.40 0.807±0.31 2.322±0.40 0.734±0.11 1.123±0.57 0.530±0.36 0.760±0.38
ENSMUST00000144957 N/A 0.810±0.17 N/A N/A N/A N/A N/A N/A 1.013±0.10 N/A N/A 0.676±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IU CIL_0000IU_0003 CGP 2:13276338-13544664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001975 IEA response to amphetamine
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 ISO cytoplasm
GO:0006306 IEA DNA methylation
GO:0008175 IMP tRNA methyltransferase activity
GO:0030488 IMP tRNA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034518 trdmt1 tRNA aspartic acid methyltransferase 1 protein_coding Danio_rerio
ENSG00000107614 TRDMT1 tRNA aspartic acid methyltransferase 1 protein_coding Homo_sapiens

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