C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000IU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087013-ENSDARG00000034518 CGP 7955 24:33241082-33401868
GeneTranscriptPositionBiotype
ENSDARG00000010008 (vim)
vimentin
ENSDART00000003745 (vim-001) 33381611-33398137 protein_coding
ENSDARG00000034518 (trdmt1)
tRNA aspartic acid methyltransferase 1
ENSDART00000048633 (trdmt1-001) 33357085-33379210 protein_coding
ENSDART00000151845 (trdmt1-002) 33378594-33401868 processed_transcript
CIL_0000IU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107611-ENSG00000107614 CGP 9606 10:16823964-17202054
GeneTranscriptPositionBiotype
ENSG00000107614 (TRDMT1)
tRNA aspartic acid methyltransferase 1
ENST00000313936 (TRDMT1-003) 17157444-17174660 protein_coding
ENST00000354631 (TRDMT1-006) 17142254-17201672 nonsense_mediated_decay
ENST00000377799 (TRDMT1-001) 17146737-17201682 protein_coding
ENST00000424636 (TRDMT1-008) 17159153-17201580 nonsense_mediated_decay
ENST00000436968 (TRDMT1-004) 17159153-17174660 protein_coding
ENST00000451253 (TRDMT1-010) 17171820-17200567 processed_transcript
ENST00000452380 (TRDMT1-009) 17151414-17169419 processed_transcript
ENST00000479046 (TRDMT1-011) 17171908-17202054 processed_transcript
ENST00000486947 (TRDMT1-012) 17171556-17201428 processed_transcript
ENST00000488990 (TRDMT1-005) 17152935-17201657 protein_coding
ENST00000495022 (TRDMT1-007) 17148916-17201851 nonsense_mediated_decay
ENST00000525762 (TRDMT1-002) 17159153-17201580 protein_coding
ENSG00000273153 (RP11-406H21.2)
ENST00000608026 (RP11-406H21.2-001) 17137336-17137585 lincRNA
CIL_0000IU_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026726-ENSMUSG00000026723 CGP 10090 2:13276338-13544664
GeneTranscriptPositionBiotype
ENSMUSG00000026723 (Trdmt1)
tRNA aspartic acid methyltransferase 1
ENSMUST00000028055 (Trdmt1-003) 13511538-13544632 processed_transcript
ENSMUST00000124488 (Trdmt1-001) 13509014-13544664 protein_coding
ENSMUST00000144957 (Trdmt1-002) 13522120-13544663 processed_transcript
ENSMUSG00000026726 (Cubn)
cubilin (intrinsic factor-cobalamin receptor)
ENSMUST00000091436 (Cubn-001) 13276338-13491924 protein_coding
ENSMUST00000148506 (Cubn-002) 13456640-13459480 retained_intron
ENSMUST00000152078 (Cubn-003) 13445021-13455624 retained_intron
ENSMUSG00000086358 (Gm13270)
predicted gene 13270
ENSMUST00000149137 (Gm13270-001) 13271602-13324791 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IU_0001ENSDARG00000010008ENSDART00000003745ENSDARG00000034518ENSDART00000048633ENSDART00000151845CIL_0000IU_0002ENSG00000107614ENST00000313936ENST00000354631ENST00000377799ENST00000424636ENST00000436968ENST00000451253ENST00000452380ENST00000479046ENST00000486947ENST00000488990ENST00000495022ENST00000525762ENSG00000273153ENST00000608026CIL_0000IU_0003ENSMUSG00000026723ENSMUST00000028055ENSMUST00000124488ENSMUST00000144957ENSMUSG00000026726ENSMUST00000091436ENSMUST00000148506ENSMUST00000152078ENSMUSG00000086358ENSMUST00000149137
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IU_0001ENSDARG00000010008ENSDART00000003745ENSDARG00000034518ENSDART00000048633CIL_0000IU_0002ENSG00000107614ENST00000313936ENST00000354631ENST00000377799ENST00000452380ENST00000486947ENST00000488990ENSG00000273153ENST00000608026CIL_0000IU_0003ENSMUSG00000026723ENSMUST00000028055ENSMUST00000124488ENSMUST00000144957ENSMUSG00000026726ENSMUST00000091436ENSMUST00000152078ENSMUSG00000086358ENSMUST00000149137
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010008 ENSDART00000003745 N/A N/A N/A 59.191±6.01 N/A N/A 42.336±11.53 15.479±0.00 0.255±0.00 N/A 20.295±0.00 N/A N/A N/A
ENSDARG00000034518 ENSDART00000048633 N/A N/A N/A N/A N/A N/A N/A 7.134±0.00 0.663±0.00 N/A N/A N/A N/A N/A
ENSDART00000151845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107614 ENST00000313936 N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A N/A
ENST00000354631 0.178±0.00 0.823±0.00 N/A 0.041±0.00 0.356±0.00 N/A 0.167±0.00 0.163±0.12 0.098±0.08 0.350±0.00 0.008±0.00 0.596±0.16 0.121±0.03 0.298±0.00
ENST00000377799 0.360±0.00 0.398±0.00 0.201±0.00 0.283±0.00 0.471±0.00 0.223±0.00 0.298±0.00 0.693±0.00 0.108±0.00 0.295±0.12 0.112±0.00 0.891±0.21 0.421±0.15 0.618±0.11
ENST00000424636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452380 N/A N/A N/A 0.270±0.09 N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 0.537±0.00
ENST00000479046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486947 N/A N/A N/A N/A N/A 1.085±0.00 N/A N/A N/A N/A N/A N/A N/A 0.635±0.00
ENST00000488990 N/A N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A 0.219±0.00 N/A N/A N/A N/A
ENST00000495022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273153 ENST00000608026 0.061±0.00 N/A N/A N/A N/A N/A 0.054±0.00 0.283±0.00 N/A 2.277±0.00 N/A 1.072±0.64 0.354±0.00 0.303±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026723 ENSMUST00000028055 N/A N/A 2.625±0.43 0.951±0.00 N/A 0.463±0.00 N/A N/A 1.489±0.48 N/A 0.567±0.07 1.830±0.68 2.119±1.10 1.985±0.00
ENSMUST00000124488 1.001±0.32 0.538±0.12 1.133±0.41 1.402±0.76 1.354±0.36 0.815±0.30 1.305±0.38 2.239±0.40 0.807±0.31 2.322±0.40 0.734±0.11 1.123±0.57 0.530±0.36 0.760±0.38
ENSMUST00000144957 N/A 0.810±0.17 N/A N/A N/A N/A N/A N/A 1.013±0.10 N/A N/A 0.676±0.00 N/A N/A
ENSMUSG00000026726 ENSMUST00000091436 0.026±0.01 0.014±0.01 0.022±0.00 0.026±0.00 0.047±0.02 0.123±0.13 0.015±0.00 21.467±6.59 0.015±0.01 N/A 0.009±0.00 0.036±0.02 23.649±29.68 0.071±0.04
ENSMUST00000148506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A
ENSMUSG00000086358 ENSMUST00000149137 0.183±0.00 0.202±0.00 N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A 0.101±0.01 0.495±0.00 N/A N/A

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