C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA aspartic acid methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124488 Trdmt1-001 ENSMUSG00000026723 10090 - 2:13509014-13544664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124488 1.001±0.32 0.538±0.12 1.133±0.41 1.402±0.76 1.354±0.36 0.815±0.30 1.305±0.38 2.239±0.40 0.807±0.31 2.322±0.40 0.734±0.11 1.123±0.57 0.530±0.36 0.760±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IU CIL_0000IU_0003 CGP 2:13276338-13544664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001975 IEA response to amphetamine
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 ISO cytoplasm
GO:0006306 IEA DNA methylation
GO:0008175 IMP tRNA methyltransferase activity
GO:0030488 IMP tRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354631 TRDMT1-006 nonsense_mediated_decay Homo_sapiens 0 918
ENST00000377799 TRDMT1-001 protein_coding Homo_sapiens 0 1092
ENST00000424636 TRDMT1-008 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000452380 TRDMT1-009 processed_transcript Homo_sapiens 0 815
ENST00000525762 TRDMT1-002 protein_coding Homo_sapiens 0 263

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