C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bmi1 polycomb ring finger oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028071 Bmi1-001 ENSMUSG00000026739 10090 + 2:18677018-18686629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028071 4.958±1.14 12.417±6.21 5.651±0.53 11.648±9.25 10.194±4.95 3.825±1.60 5.048±0.80 9.141±2.16 3.129±1.00 13.476±3.00 4.993±0.55 9.711±5.67 3.363±1.50 33.319±8.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0003 CGP 2:18672384-18686629
CIL_00091O CIL_00091O_0002 VISTA 2:18672805-19274286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA:ISS ubiquitin ligase complex
GO:0000792 IDA heterochromatin
GO:0001501 IMP skeletal system development
GO:0001701 IGI in utero embryonic development
GO:0003682 IDA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005737 IEA cytoplasm
GO:0006306 IMP DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006959 IMP humoral immune response
GO:0007420 IMP brain development
GO:0008270 IEA:ISS zinc ion binding
GO:0009987 TAS cellular process
GO:0010468 IEA regulation of gene expression
GO:0016573 IGI histone acetylation
GO:0016574 IDA histone ubiquitination
GO:0016604 IDA nuclear body
GO:0021903 IMP rostrocaudal neural tube patterning
GO:0030097 IEA hemopoiesis
GO:0030890 IMP positive regulation of B cell proliferation
GO:0031519 IDA PcG protein complex
GO:0033092 IMP positive regulation of immature T cell proliferation in thymus
GO:0035102 IEA PRC1 complex
GO:0043565 IDA sequence-specific DNA binding
GO:0048103 IMP somatic stem cell division
GO:0048146 IEA positive regulation of fibroblast proliferation
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0051443 ISS positive regulation of ubiquitin-protein transferase activity
GO:0071535 IEA RING-like zinc finger domain binding
GO:2001234 IGI negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376663 BMI1-001 protein_coding Homo_sapiens 0 3550
ENST00000416820 BMI1-008 protein_coding Homo_sapiens 0 501
ENST00000417470 COMMD3-BMI1-002 nonsense_mediated_decay Homo_sapiens 0 891
ENST00000442508 BMI1-002 protein_coding Homo_sapiens 0 678
ENST00000443519 BMI1-005 protein_coding Homo_sapiens 0 555
ENST00000445879 RP11-383C12.2-001 processed_pseudogene Homo_sapiens 0 486
ENST00000456675 BMI1-011 retained_intron Homo_sapiens 0 617
ENST00000463409 COMMD3-BMI1-006 processed_transcript Homo_sapiens 1e-30 137
ENST00000475460 COMMD3-BMI1-004 protein_coding Homo_sapiens 0 200
ENST00000489125 COMMD3-BMI1-005 protein_coding Homo_sapiens 5e-31 137
ENST00000490311 BMI1-007 retained_intron Homo_sapiens 0 689
ENST00000496174 BMI1-006 retained_intron Homo_sapiens 0 381
ENST00000602358 BMI1-010 retained_intron Homo_sapiens 0 575
ENST00000602390 COMMD3-BMI1-001 protein_coding Homo_sapiens 0 1402
ENST00000602395 COMMD3-BMI1-003 retained_intron Homo_sapiens 1e-30 137
ENST00000602523 BMI1-009 retained_intron Homo_sapiens 0 475
ENST00000602524 BMI1-012 retained_intron Homo_sapiens 0 206

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