C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DnaJ (Hsp40) homolog, subfamily C, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026740 Dnajc1 10090 - 2:18195654-18392830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028072 Dnajc1-008 18217135-18392642 nonsense_mediated_decay
  ENSMUST00000091418 Dnajc1-004 18206333-18392811 protein_coding
  ENSMUST00000148401 Dnajc1-003 18195654-18219557 protein_coding
  ENSMUST00000153055 Dnajc1-002 18308585-18392824 processed_transcript
  ENSMUST00000163130 Dnajc1-006 18217135-18392420 nonsense_mediated_decay
  ENSMUST00000164606 Dnajc1-007 18306638-18310258 retained_intron
  ENSMUST00000164835 Dnajc1-011 18219531-18307016 nonsense_mediated_decay
  ENSMUST00000165793 Dnajc1-010 18316792-18392830 retained_intron
  ENSMUST00000166495 Dnajc1-001 18213749-18392830 protein_coding
  ENSMUST00000168723 Dnajc1-005 18217155-18392421 protein_coding
  ENSMUST00000172210 Dnajc1-009 18209229-18216902 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028072ENSMUST00000091418ENSMUST00000153055ENSMUST00000164835ENSMUST00000165793ENSMUST00000166495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.384±0.00 36.319±9.07 N/A
ENSMUST00000091418 5.922±0.05 8.388±1.22 3.518±0.27 4.891±2.71 5.415±1.35 6.014±0.13 N/A 3.830±0.31 3.231±0.79 6.524±1.20 0.875±0.14 6.929±1.85 3.556±1.14 8.025±3.60
ENSMUST00000153055 N/A 15.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.059±0.00 N/A N/A
ENSMUST00000164835 N/A N/A N/A 21.014±0.00 N/A N/A N/A N/A N/A N/A N/A 38.776±0.00 61.464±6.10 N/A
ENSMUST00000165793 N/A 22.290±5.30 N/A N/A 10.782±0.52 7.412±0.42 N/A N/A N/A 12.384±0.00 N/A 14.492±2.23 N/A N/A
ENSMUST00000166495 6.252±3.10 8.090±1.25 6.840±0.30 5.150±1.79 5.852±0.30 4.523±0.43 3.522±0.36 4.776±0.57 3.329±1.08 7.476±1.17 1.967±0.34 8.093±2.14 4.127±1.06 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096N CIL_00096N_0002 VISTA 2:17746233-18347055
CIL_000781 CIL_000781_0003 CGP 2:18040676-18212388
CIL_0007JW CIL_0007JW_0002 UCNEbase 2:18048722-18311061
CIL_000238 CIL_000238_0002 CGP 2:18055237-18392830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 IDA plasma membrane
GO:0006417 IDA regulation of translation
GO:0006457 IDA protein folding
GO:0016020 IEA membrane
GO:0016021 TAS integral component of membrane
GO:0043022 TAS ribosome binding
GO:0050708 ISS regulation of protein secretion
GO:0051087 IDA chaperone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001940 dnajc1 DnaJ (Hsp40) homolog, subfamily C, member 1 protein_coding Danio_rerio
ENSG00000136770 DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 protein_coding Homo_sapiens

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