C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166495 Dnajc1-001 ENSMUSG00000026740 10090 - 2:18213749-18392830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000166495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000166495 6.252±3.10 8.090±1.25 6.840±0.30 5.150±1.79 5.852±0.30 4.523±0.43 3.522±0.36 4.776±0.57 3.329±1.08 7.476±1.17 1.967±0.34 8.093±2.14 4.127±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096N CIL_00096N_0002 VISTA 2:17746233-18347055
CIL_000781 CIL_000781_0003 CGP 2:18040676-18212388
CIL_0007JW CIL_0007JW_0002 UCNEbase 2:18048722-18311061
CIL_000238 CIL_000238_0002 CGP 2:18055237-18392830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 IDA plasma membrane
GO:0006417 IDA regulation of translation
GO:0006457 IDA protein folding
GO:0016020 IEA membrane
GO:0016021 TAS integral component of membrane
GO:0043022 TAS ribosome binding
GO:0050708 ISS regulation of protein secretion
GO:0051087 IDA chaperone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376946 DNAJC1-004 retained_intron Homo_sapiens 0 342
ENST00000376980 DNAJC1-001 protein_coding Homo_sapiens 0 1967
ENST00000447548 DNAJC1-005 processed_transcript Homo_sapiens 0 418
ENST00000476103 DNAJC1-003 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000483085 DNAJC1-002 processed_transcript Homo_sapiens 0 348
ENST00000549267 RP11-274M17.2-001 processed_pseudogene Homo_sapiens 0 351

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